Variant report

Variant	rs2789424
Chromosome Location	chr1:159942456-159942457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159915582..159917480-chr1:159941204..159942730,2	MCF-7	breast:
2	chr1:159940364..159943958-chr1:159945441..159948326,4	K562	blood:
3	chr1:159941373..159945403-chr1:159947099..159949838,3	MCF-7	breast:
4	chr1:159940364..159943958-chr1:159945602..159948326,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11265301	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316963	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2789425	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2820555	0.81[ASN][1000 genomes]
rs2820575	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2840591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66496035	0.90[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159932000-159949800	Weak transcription	Esophagus	oesophagus
2	chr1:159933200-159947200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:159933400-159950600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:159937400-159947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:159937600-159944000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:159938000-159943400	Enhancers	Stomach Mucosa	stomach
7	chr1:159938200-159943400	Enhancers	Fetal Intestine Large	intestine
8	chr1:159939000-159945200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:159940200-159947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:159940600-159942600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr1:159941000-159944600	Strong transcription	NHEK	skin
12	chr1:159941200-159942600	Strong transcription	Fetal Stomach	stomach
13	chr1:159941600-159957800	Weak transcription	Right Atrium	heart
14	chr1:159942000-159943200	Genic enhancers	Fetal Intestine Small	intestine
15	chr1:159942000-159951200	Weak transcription	Gastric	stomach
16	chr1:159942000-159951600	Weak transcription	Pancreas	Pancrea
17	chr1:159942200-159947200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr1:159942200-159950000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:159942200-159959400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:159942400-159942600	Genic enhancers	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links