Variant report

Variant	rs66496035
Chromosome Location	chr1:159929837-159929838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159893947..159895991-chr1:159928260..159930233,2	MCF-7	breast:
2	chr1:159925103..159927154-chr1:159928753..159930871,2	MCF-7	breast:
3	chr1:159913973..159917644-chr1:159927852..159934070,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158710	Chromatin interaction
ENSG00000085552	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11265301	0.90[ASN][1000 genomes]
rs1316963	1.00[ASN][1000 genomes]
rs2789424	0.90[ASN][1000 genomes]
rs2789425	0.81[ASN][1000 genomes]
rs2820555	0.90[ASN][1000 genomes]
rs2820575	0.81[ASN][1000 genomes]
rs2840591	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872489	chr1:159844819-159940000	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv548055	chr1:159918418-159940000	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520773	chr1:159922959-159935569	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159916200-159930600	Weak transcription	Right Atrium	heart
2	chr1:159919800-159930400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:159927600-159930000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:159927600-159930400	Enhancers	Stomach Mucosa	stomach
5	chr1:159928000-159931000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:159928000-159931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:159928000-159941800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:159928200-159931400	Enhancers	K562	blood
9	chr1:159928600-159930400	Enhancers	Placenta	Placenta
10	chr1:159928800-159930200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:159928800-159930200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:159928800-159930600	Enhancers	NHEK	skin
13	chr1:159928800-159931400	Enhancers	Esophagus	oesophagus
14	chr1:159929000-159931000	Weak transcription	Gastric	stomach
15	chr1:159929000-159931000	Enhancers	HMEC	breast
16	chr1:159929000-159931600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:159929200-159930200	Weak transcription	Fetal Intestine Large	intestine
18	chr1:159929400-159934000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:159929600-159930600	Weak transcription	Fetal Intestine Small	intestine
20	chr1:159929600-159930600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:159929800-159930600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:159929800-159930600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:159929800-159930600	Weak transcription	NHDF-Ad	bronchial
24	chr1:159929800-159930600	Weak transcription	Osteobl	bone

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