Variant report

Variant	rs2820575
Chromosome Location	chr1:159950131-159950132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159914741..159917629-chr1:159949872..159952266,2	K562	blood:
2	chr1:159947758..159952541-chr1:159952979..159956390,5	K562	blood:
3	chr1:159948553..159951043-chr1:159956988..159959245,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNJ9-2	chr1:159946069-159950343	NONHSAT007031

Variant related genes	Relation type
ENSG00000085552	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11265301	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1316963	0.81[ASN][1000 genomes]
rs2789424	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2789425	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789427	0.82[AMR][1000 genomes]
rs2840591	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66496035	0.81[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159933400-159950600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:159941600-159957800	Weak transcription	Right Atrium	heart
3	chr1:159942000-159951200	Weak transcription	Gastric	stomach
4	chr1:159942000-159951600	Weak transcription	Pancreas	Pancrea
5	chr1:159942200-159959400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:159943200-159951200	Weak transcription	Colonic Mucosa	Colon
7	chr1:159945800-159951200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:159946800-159952200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:159946800-159955200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:159947000-159953800	Strong transcription	NHEK	skin
11	chr1:159947200-159952400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:159947600-159950800	Weak transcription	Stomach Mucosa	stomach
13	chr1:159947600-159955200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:159948000-159950200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:159948000-159950200	Enhancers	Fetal Stomach	stomach
16	chr1:159948200-159950200	Enhancers	Rectal Smooth Muscle	rectum
17	chr1:159948200-159951000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:159948800-159951200	Weak transcription	Placenta	Placenta
19	chr1:159949600-159950200	Enhancers	Colon Smooth Muscle	Colon
20	chr1:159949800-159950200	Genic enhancers	Duodenum Mucosa	Duodenum
21	chr1:159949800-159950200	ZNF genes & repeats	Esophagus	oesophagus
22	chr1:159950000-159951800	Strong transcription	Fetal Intestine Small	intestine
23	chr1:159950000-159952000	Strong transcription	Rectal Mucosa Donor 31	rectum

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