Variant report

Variant	rs2800168
Chromosome Location	chr10:92426900-92426901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1419342	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1419344	0.81[EUR][1000 genomes]
rs1857593	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1857594	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1936575	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1936577	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1936578	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1936579	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1936580	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1936615	0.81[EUR][1000 genomes]
rs1936616	0.81[EUR][1000 genomes]
rs1936618	0.81[EUR][1000 genomes]
rs2226213	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2253126	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2253127	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2253139	0.81[EUR][1000 genomes]
rs2253145	0.81[EUR][1000 genomes]
rs2253576	0.83[EUR][1000 genomes]
rs2253577	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2263616	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2263617	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2263618	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2263619	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2263620	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2420189	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2420190	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2420191	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2489294	0.81[EUR][1000 genomes]
rs2710744	0.83[EUR][1000 genomes]
rs2710751	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2710755	0.81[EUR][1000 genomes]
rs2710756	0.81[EUR][1000 genomes]
rs2710759	0.81[EUR][1000 genomes]
rs2710760	0.81[EUR][1000 genomes]
rs2710762	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2710763	0.80[EUR][1000 genomes]
rs2710765	0.81[EUR][1000 genomes]
rs2800160	0.81[EUR][1000 genomes]
rs2800161	0.80[EUR][1000 genomes]
rs2800162	0.81[EUR][1000 genomes]
rs2800163	0.81[EUR][1000 genomes]
rs2800164	0.82[EUR][1000 genomes]
rs2800165	0.82[EUR][1000 genomes]
rs2800166	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800167	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800170	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800174	0.83[EUR][1000 genomes]
rs2800176	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2800177	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800179	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2800180	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800182	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800183	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7475193	0.82[ASN][1000 genomes]
rs7477314	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1052753	chr10:92081093-92565617	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv467432	chr10:92082250-92559908	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv551879	chr10:92082250-92559908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv467433	chr10:92083015-92598458	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv551880	chr10:92083015-92598458	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv516743	chr10:92083015-92605119	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1036256	chr10:92083932-92459915	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1049931	chr10:92083932-92605364	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv551881	chr10:92090785-92457733	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv551882	chr10:92090785-92598823	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1047255	chr10:92095431-92548184	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv540744	chr10:92095431-92548184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1054504	chr10:92099335-92590723	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv533133	chr10:92363552-92594891	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92426000-92427200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:92426800-92434800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links