Variant report

Variant	rs2805639
Chromosome Location	chr13:90758857-90758858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90757480..90759080-chr13:90956542..90958923,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-10	chr13:90758837-90760915	ENSG00000261446.1
2	lnc-DCT-10	chr13:90758837-90760915	NONHSAT034642

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12427571	0.86[ASN][1000 genomes]
rs12428396	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12429307	0.86[ASN][1000 genomes]
rs12429707	0.86[ASN][1000 genomes]
rs1491029	0.87[ASN][1000 genomes]
rs1491031	0.87[ASN][1000 genomes]
rs1491032	0.87[ASN][1000 genomes]
rs1491033	0.86[ASN][1000 genomes]
rs1491034	0.87[ASN][1000 genomes]
rs1565523	0.87[ASN][1000 genomes]
rs1565524	0.87[ASN][1000 genomes]
rs1602408	0.87[ASN][1000 genomes]
rs1602409	0.87[ASN][1000 genomes]
rs1907428	0.88[ASN][1000 genomes]
rs1907431	0.86[ASN][1000 genomes]
rs2130836	0.87[ASN][1000 genomes]
rs2130840	0.87[ASN][1000 genomes]
rs2637379	0.84[ASN][1000 genomes]
rs2637380	0.87[ASN][1000 genomes]
rs2637381	0.87[ASN][1000 genomes]
rs2637383	0.87[ASN][1000 genomes]
rs2637384	0.86[ASN][1000 genomes]
rs2637386	0.86[ASN][1000 genomes]
rs2637398	0.82[ASN][1000 genomes]
rs2637483	0.87[ASN][1000 genomes]
rs2637484	0.87[ASN][1000 genomes]
rs2637485	0.86[ASN][1000 genomes]
rs2637487	0.88[ASN][1000 genomes]
rs2805635	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2805636	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2805637	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2805666	0.86[ASN][1000 genomes]
rs2805667	0.86[ASN][1000 genomes]
rs2805668	0.86[ASN][1000 genomes]
rs2805672	0.87[ASN][1000 genomes]
rs2805673	0.87[ASN][1000 genomes]
rs2805674	0.87[ASN][1000 genomes]
rs72641506	0.96[ASN][1000 genomes]
rs7331246	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs7331447	0.86[ASN][1000 genomes]
rs7984840	0.86[ASN][1000 genomes]
rs7988217	0.86[ASN][1000 genomes]
rs9555968	0.85[ASN][1000 genomes]
rs9560530	0.86[ASN][1000 genomes]
rs9560531	0.86[ASN][1000 genomes]
rs9560546	0.88[ASN][1000 genomes]
rs9560554	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3330508	chr13:90401807-90835334	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1039817	chr13:90425965-90884271	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1054500	chr13:90427793-90879758	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv541867	chr13:90427793-90879758	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv456064	chr13:90429193-90886078	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
7	nsv562644	chr13:90429193-90886078	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1036137	chr13:90509098-90772092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv541868	chr13:90509098-90772092	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1047307	chr13:90509098-90849504	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv541869	chr13:90509098-90849504	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv1044540	chr13:90509098-91497974	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
13	nsv541870	chr13:90509098-91497974	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
14	nsv1035856	chr13:90653288-91490014	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
15	nsv832677	chr13:90687286-90848836	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv826741	chr13:90688393-90849153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv562646	chr13:90689775-90823859	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
19	nsv528428	chr13:90756983-90761259	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90756800-90759000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:90757000-90759000	Enhancers	NHEK	skin
3	chr13:90757200-90759000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:90757200-90759000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr13:90757400-90759200	Weak transcription	Esophagus	oesophagus
6	chr13:90758000-90759000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:90758400-90759000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:90758400-90759800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:90758600-90760200	Weak transcription	Fetal Muscle Leg	muscle

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