Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1106366	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11207168	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11207169	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11207170	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11800351	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12088082	0.81[ASN][1000 genomes]
rs1359494	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs17116847	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs17116869	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1776184	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2764682	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2764685	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2764686	0.83[CEU][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes]
rs2764687	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs3118212	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3121907	0.94[ASW][hapmap];0.92[CEU][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4320799	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs58745009	0.83[ASN][1000 genomes]
rs72906581	0.82[ASN][1000 genomes]
rs821529	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs821530	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs872691	0.82[ASN][1000 genomes]
rs873989	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9782935	0.95[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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