Variant report

Variant	rs1359494
Chromosome Location	chr1:58548267-58548268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10889083	0.97[EUR][1000 genomes]
rs1106366	0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1106367	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs11207168	0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207169	0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11207170	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11800351	0.96[CHB][hapmap];0.85[JPT][hapmap]
rs11802821	0.81[CEU][hapmap]
rs12048970	0.81[CEU][hapmap]
rs12058945	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs12088082	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1213764	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs1213770	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1213771	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13374932	0.81[CEU][hapmap]
rs1342875	0.81[CEU][hapmap]
rs1359495	0.85[CEU][hapmap]
rs1416346	0.81[CEU][hapmap]
rs17116847	0.90[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17116867	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17116869	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17116983	0.81[CEU][hapmap]
rs17116988	0.81[CEU][hapmap]
rs17117013	0.81[CEU][hapmap]
rs17117101	0.81[CEU][hapmap]
rs1776184	0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1832488	0.83[CEU][hapmap]
rs1832489	0.81[CEU][hapmap]
rs1953811	0.81[CEU][hapmap]
rs1992481	0.91[CEU][hapmap]
rs2806405	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs3850535	0.81[CEU][hapmap]
rs3861823	0.91[CEU][hapmap]
rs3905539	0.81[CEU][hapmap]
rs4320799	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58029039	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58745009	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59081310	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72906581	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74076064	0.80[EUR][1000 genomes]
rs7522031	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs821525	0.96[EUR][1000 genomes]
rs821527	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs821529	0.90[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs821530	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs872691	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs873989	0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9782935	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58548200-58550200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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