Variant report

Variant	rs59081310
Chromosome Location	chr1:58572153-58572154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:58570655..58572419-chr1:58578627..58580826,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1004297	0.84[ASN][1000 genomes]
rs10889083	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889084	0.84[ASN][1000 genomes]
rs1106366	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1106367	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11207168	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11207169	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11207170	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12031853	0.84[ASN][1000 genomes]
rs12058945	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088082	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1213764	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1213770	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1213771	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1320555	0.99[ASN][1000 genomes]
rs1359494	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17116867	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116869	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1776184	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2406589	0.83[ASN][1000 genomes]
rs2764682	0.85[ASN][1000 genomes]
rs2764685	0.82[ASN][1000 genomes]
rs2764686	0.82[ASN][1000 genomes]
rs3118212	0.85[ASN][1000 genomes]
rs3121907	0.82[ASN][1000 genomes]
rs4320799	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57918745	0.84[ASN][1000 genomes]
rs58029039	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58745009	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72906581	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74076064	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7522031	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs821525	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs821526	0.99[ASN][1000 genomes]
rs821527	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs821528	0.99[ASN][1000 genomes]
rs821529	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs821530	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs872691	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs873989	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs946310	0.99[ASN][1000 genomes]
rs9782935	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58570000-58576000	Enhancers	GM12878-XiMat	blood

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