Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10889083	0.83[ASN][1000 genomes]
rs10889084	0.81[CHB][hapmap]
rs1106367	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs12031853	0.81[CHB][hapmap]
rs12041539	0.89[JPT][hapmap]
rs12058945	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1213764	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs1213770	0.82[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs1213771	0.81[ASN][1000 genomes]
rs1320555	0.82[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs1359495	0.86[CHB][hapmap]
rs17116867	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2764682	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2764685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764687	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs2806405	0.83[CEU][hapmap];0.82[MEX][hapmap]
rs2806406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3118212	0.97[ASN][1000 genomes]
rs3121907	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58029039	0.82[ASN][1000 genomes]
rs59081310	0.82[ASN][1000 genomes]
rs7522031	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs821525	0.81[ASN][1000 genomes]
rs821526	0.81[ASN][1000 genomes]
rs821527	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[ASN][1000 genomes]
rs821528	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs946310	0.82[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58539000-58539400	Weak transcription	Fetal Brain Female	brain
2	chr1:58539000-58543000	Enhancers	Fetal Brain Male	brain

Quick Search: