Variant report

Variant	rs2811860
Chromosome Location	chr1:59193214-59193215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59192672..59194770-chr1:59244784..59246788,2	MCF-7	breast:
2	chr1:59191433..59194290-chr1:59244978..59247044,2	K562	blood:
3	chr1:59190245..59193949-chr1:59247631..59250886,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234807	Chromatin interaction
ENSG00000177606	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2760493	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811863	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59183400-59197600	Weak transcription	Aorta	Aorta
2	chr1:59188600-59193400	Enhancers	GM12878-XiMat	blood
3	chr1:59189800-59194200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:59189800-59194400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:59190200-59194400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:59191200-59194400	Enhancers	HMEC	breast
7	chr1:59191800-59194400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:59191800-59194400	Enhancers	HUVEC	blood vessel
9	chr1:59192200-59194400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:59192400-59193600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:59192400-59193800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:59192400-59193800	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:59192400-59193800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:59192400-59193800	Enhancers	Osteobl	bone
15	chr1:59192400-59194200	Enhancers	NHDF-Ad	bronchial
16	chr1:59192400-59194400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:59192400-59194400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:59192400-59194400	Enhancers	HSMM	muscle
19	chr1:59192400-59194400	Enhancers	NHEK	skin
20	chr1:59192600-59193800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:59192600-59193800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:59192600-59193800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:59192600-59194400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:59192600-59204200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:59192800-59193600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:59192800-59193600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:59192800-59194000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr1:59192800-59194400	Enhancers	Hela-S3	cervix
29	chr1:59192800-59194400	Enhancers	HepG2	liver
30	chr1:59193000-59193400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:59193000-59193400	Flanking Active TSS	A549	lung
32	chr1:59193000-59193600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:59193000-59193800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr1:59193000-59193800	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:59193000-59194400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:59193000-59194400	Enhancers	NHLF	lung
37	chr1:59193200-59193400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr1:59193200-59193400	Enhancers	Left Ventricle	heart
39	chr1:59193200-59193400	Enhancers	NH-A	brain
40	chr1:59193200-59193600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:59193200-59193600	Enhancers	Spleen	Spleen
42	chr1:59193200-59194000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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