Variant report

Variant	rs2811875
Chromosome Location	chr1:59210314-59210315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2760493	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59205200-59211200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:59205600-59210800	Weak transcription	HMEC	breast
3	chr1:59206000-59211200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:59206200-59214200	Weak transcription	Fetal Kidney	kidney
5	chr1:59206200-59221000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:59206600-59210600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:59206600-59210800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:59206600-59211000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:59207600-59220000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:59207800-59211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:59207800-59220000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:59207800-59220000	Weak transcription	Psoas Muscle	Psoas
13	chr1:59208000-59210800	Weak transcription	NHDF-Ad	bronchial
14	chr1:59208000-59215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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