Variant report

Variant	rs2811863
Chromosome Location	chr1:59200355-59200356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2760493	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811860	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59192600-59204200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:59198000-59200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:59198200-59201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:59198200-59206200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:59198600-59205800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:59198800-59204000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:59198800-59207200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:59200000-59200400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:59200200-59200400	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links