Variant report

Variant	rs281362
Chromosome Location	chr17:19793617-19793618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs115326	1.00[CEU][hapmap]
rs118943	1.00[CEU][hapmap]
rs150122	1.00[CEU][hapmap]
rs157387	1.00[CEU][hapmap]
rs157388	1.00[CEU][hapmap]
rs157389	1.00[CEU][hapmap]
rs157390	1.00[CEU][hapmap]
rs157391	1.00[CEU][hapmap]
rs157393	1.00[CEU][hapmap]
rs157394	1.00[CEU][hapmap]
rs157395	1.00[CEU][hapmap]
rs157396	1.00[CEU][hapmap]
rs157397	1.00[CEU][hapmap]
rs157401	1.00[CEU][hapmap]
rs157402	1.00[CEU][hapmap]
rs157405	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs157406	1.00[CEU][hapmap]
rs157408	1.00[CEU][hapmap]
rs157409	1.00[CEU][hapmap]
rs166838	1.00[CEU][hapmap]
rs169512	1.00[CEU][hapmap]
rs169513	1.00[CEU][hapmap]
rs172186	1.00[CEU][hapmap]
rs176098	1.00[CEU][hapmap]
rs184006	1.00[CEU][hapmap]
rs188138	1.00[CEU][hapmap]
rs192511	1.00[CEU][hapmap]
rs205088	0.82[CEU][hapmap]
rs205090	1.00[CEU][hapmap]
rs205093	1.00[CEU][hapmap]
rs205094	1.00[CEU][hapmap]
rs205096	1.00[CEU][hapmap]
rs205098	1.00[CEU][hapmap]
rs205099	1.00[CEU][hapmap]
rs205100	1.00[CEU][hapmap]
rs205103	1.00[CEU][hapmap]
rs205104	1.00[CEU][hapmap]
rs205107	1.00[CEU][hapmap]
rs205108	1.00[CEU][hapmap]
rs205110	1.00[CEU][hapmap]
rs205111	1.00[CEU][hapmap]
rs281327	1.00[CEU][hapmap]
rs281332	1.00[CEU][hapmap]
rs281333	1.00[CEU][hapmap]
rs281334	1.00[CEU][hapmap]
rs281342	1.00[CEU][hapmap]
rs281343	1.00[CEU][hapmap]
rs281346	1.00[CEU][hapmap]
rs281347	1.00[CEU][hapmap]
rs281348	1.00[CEU][hapmap]
rs281350	1.00[CEU][hapmap]
rs281351	1.00[CEU][hapmap]
rs281352	1.00[CEU][hapmap]
rs281353	1.00[CEU][hapmap]
rs281354	1.00[CEU][hapmap]
rs281355	1.00[CEU][hapmap]
rs281359	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs281361	1.00[EUR][1000 genomes]
rs281363	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098906	1.00[CEU][hapmap]
rs3101810	1.00[CEU][hapmap]
rs3101814	1.00[CEU][hapmap]
rs3101815	1.00[CEU][hapmap]
rs379703	1.00[CEU][hapmap]
rs395130	1.00[CEU][hapmap]
rs421561	1.00[CEU][hapmap]
rs6587203	1.00[CEU][hapmap]
rs917519	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv518888	chr17:19789453-19804247	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv10513	chr17:19791123-19798915	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19793600-19794800	Enhancers	Placenta	Placenta

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