Variant report

Variant	rs282024
Chromosome Location	chr1:91852431-91852432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:72)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:72 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr1:91851334..91853102-chr12:34372625..34374158,7	MCF-7	breast:
2	chr1:91851381..91853086-chr2:230044008..230045593,2	MCF-7	breast:
3	chr1:91851628..91854418-chrX:125715189..125716759,2	K562	blood:
4	chr1:91852382..91852927-chr4:76806714..76807218,2	MCF-7	breast:
5	chr1:91851410..91853097-chr4:76805695..76807217,3	MCF-7	breast:
6	chr1:91851309..91852905-chr12:127650898..127652428,6	K562	blood:
7	chr1:91851287..91854645-chr21:9825095..9828547,9	K562	blood:
8	chr1:91852359..91852968-chr9:79186176..79186699,5	MCF-7	breast:
9	chr1:91851302..91853083-chr2:133035035..133039055,6	K562	blood:
10	chr1:91852387..91853335-chr12:127650524..127651402,3	K562	blood:
11	chr1:91852387..91852921-chr17:31148956..31149878,2	MCF-7	breast:
12	chr1:91851493..91854339-chr2:224711641..224713931,2	MCF-7	breast:
13	chr1:91852355..91852916-chr12:34372634..34373168,4	MCF-7	breast:
14	chr1:91851307..91854415-chr20:26188724..26191391,3	K562	blood:
15	chr1:91851339..91852991-chr16:33948101..33950191,2	MCF-7	breast:
16	chr1:91852378..91853013-chr4:76806710..76807218,2	MCF-7	breast:
17	chr1:91851478..91854506-chr2:230045518..230047103,3	K562	blood:
18	chr1:91851458..91854565-chrX:108296200..108299331,8	MCF-7	breast:
19	chr1:91852357..91853118-chr12:34372627..34373168,5	MCF-7	breast:
20	chr1:91851562..91854585-chr11:85195040..85196753,3	K562	blood:
21	chr1:91852371..91853009-chr3:117985274..117986273,2	MCF-7	breast:
22	chr1:91852180..91854367-chr2:157945911..157947882,2	K562	blood:
23	chr1:91851287..91854647-chr21:9824128..9829020,13	K562	blood:
24	chr1:91851583..91854616-chr2:133036036..133038051,4	MCF-7	breast:
25	chr1:91852328..91853086-chr9:79186162..79186847,4	MCF-7	breast:
26	chr1:91850725..91852999-chr1:91868753..91870397,2	K562	blood:
27	chr1:91851309..91854564-chr12:127649174..127652461,7	K562	blood:
28	chr1:91852379..91853027-chr3:117985273..117985793,2	MCF-7	breast:
29	chr1:91852372..91853364-chr20:26189736..26190468,2	MCF-7	breast:
30	chr1:91852368..91853008-chr17:31149191..31149753,2	HCT-116	colon:
31	chr1:91851421..91853014-chr17:31147949..31149879,3	K562	blood:
32	chr1:91851381..91852904-chr4:76805694..76807215,2	K562	blood:
33	chr1:91851325..91852905-chr17:31147972..31151202,6	MCF-7	breast:
34	chr1:91851357..91852890-chr2:133010879..133013835,2	K562	blood:
35	chr1:91852373..91853105-chr9:79186162..79186710,4	MCF-7	breast:
36	chr1:91852287..91852888-chr9:79186190..79186753,3	HCT-116	colon:
37	chr1:91851289..91853099-chr12:127650500..127652448,7	MCF-7	breast:
38	chr1:91851478..91854379-chr2:230045518..230047085,3	K562	blood:
39	chr1:91852303..91852973-chr12:34372638..34373146,2	HCT-116	colon:
40	chr1:91851307..91852932-chr20:26188724..26191391,2	K562	blood:
41	chr1:91852338..91853011-chr12:127650522..127651481,10	MCF-7	breast:
42	chr1:91851344..91853074-chr12:34372634..34374167,5	MCF-7	breast:
43	chr1:91852287..91853034-chr12:127650621..127651461,9	MCF-7	breast:
44	chr1:91851368..91854628-chrX:108296235..108299327,13	K562	blood:
45	chr1:91852330..91853034-chr12:34372628..34373167,11	MCF-7	breast:
46	chr1:91851284..91852891-chr9:79185170..79186720,3	MCF-7	breast:
47	chr1:91851364..91853126-chr12:127650504..127652417,7	MCF-7	breast:
48	chr1:91852393..91852981-chr9:79186201..79186708,3	K562	blood:
49	chr1:91852309..91852881-chr12:127650505..127651422,5	MCF-7	breast:
50	chr1:91851293..91854462-chr17:31147939..31151304,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000241781	Chromatin interaction
ENSG00000156194	Chromatin interaction
ENSG00000226958	Chromatin interaction
ENSG00000264063	Chromatin interaction
ENSG00000227195	Chromatin interaction
ENSG00000239776	Chromatin interaction
ENSG00000255652	Chromatin interaction
ENSG00000264462	Chromatin interaction
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1579703	1.00[AFR][1000 genomes]
rs166855	1.00[AFR][1000 genomes]
rs166856	1.00[AFR][1000 genomes]
rs169473	1.00[AFR][1000 genomes]
rs176019	1.00[AFR][1000 genomes]
rs1837543	1.00[AFR][1000 genomes]
rs183988	1.00[AFR][1000 genomes]
rs188153	1.00[AFR][1000 genomes]
rs188154	1.00[AFR][1000 genomes]
rs281936	1.00[AFR][1000 genomes]
rs281938	1.00[AFR][1000 genomes]
rs281940	1.00[AFR][1000 genomes]
rs281941	1.00[AFR][1000 genomes]
rs281944	0.83[AFR][1000 genomes]
rs281945	1.00[AFR][1000 genomes]
rs281946	1.00[AFR][1000 genomes]
rs281947	1.00[AFR][1000 genomes]
rs281949	1.00[AFR][1000 genomes]
rs281951	1.00[AFR][1000 genomes]
rs281952	1.00[AFR][1000 genomes]
rs281954	1.00[AFR][1000 genomes]
rs281960	1.00[AFR][1000 genomes]
rs281961	1.00[AFR][1000 genomes]
rs281962	1.00[AFR][1000 genomes]
rs281963	1.00[AFR][1000 genomes]
rs281964	1.00[AFR][1000 genomes]
rs281965	1.00[AFR][1000 genomes]
rs281967	1.00[AFR][1000 genomes]
rs281969	1.00[AFR][1000 genomes]
rs281970	1.00[AFR][1000 genomes]
rs281971	1.00[AFR][1000 genomes]
rs281972	1.00[AFR][1000 genomes]
rs281974	1.00[AFR][1000 genomes]
rs281975	1.00[AFR][1000 genomes]
rs281976	1.00[AFR][1000 genomes]
rs281980	1.00[AFR][1000 genomes]
rs281981	1.00[AFR][1000 genomes]
rs281982	1.00[AFR][1000 genomes]
rs281983	1.00[AFR][1000 genomes]
rs281987	1.00[AFR][1000 genomes]
rs281989	1.00[AFR][1000 genomes]
rs281991	1.00[AFR][1000 genomes]
rs281993	1.00[AFR][1000 genomes]
rs281994	1.00[AFR][1000 genomes]
rs281995	1.00[AFR][1000 genomes]
rs281999	1.00[AFR][1000 genomes]
rs282002	1.00[AFR][1000 genomes]
rs282006	1.00[AFR][1000 genomes]
rs282009	1.00[AFR][1000 genomes]
rs282015	1.00[AFR][1000 genomes]
rs282016	1.00[AFR][1000 genomes]
rs282018	1.00[AFR][1000 genomes]
rs282019	1.00[AFR][1000 genomes]
rs282022	1.00[AFR][1000 genomes]
rs282025	1.00[AFR][1000 genomes]
rs282026	1.00[AFR][1000 genomes]
rs282027	1.00[AFR][1000 genomes]
rs282028	1.00[AFR][1000 genomes]
rs282029	1.00[AFR][1000 genomes]
rs282030	1.00[AFR][1000 genomes]
rs282031	1.00[AFR][1000 genomes]
rs282033	1.00[AFR][1000 genomes]
rs282035	1.00[AFR][1000 genomes]
rs282036	1.00[AFR][1000 genomes]
rs282037	1.00[AFR][1000 genomes]
rs282039	1.00[AFR][1000 genomes]
rs282040	1.00[AFR][1000 genomes]
rs282041	1.00[AFR][1000 genomes]
rs282051	1.00[AFR][1000 genomes]
rs282052	1.00[AFR][1000 genomes]
rs282055	1.00[AFR][1000 genomes]
rs282059	1.00[AFR][1000 genomes]
rs282060	1.00[AFR][1000 genomes]
rs282061	1.00[AFR][1000 genomes]
rs282062	1.00[AFR][1000 genomes]
rs282063	1.00[AFR][1000 genomes]
rs376322	1.00[AFR][1000 genomes]
rs399362	1.00[AFR][1000 genomes]
rs400641	1.00[AFR][1000 genomes]
rs417209	1.00[AFR][1000 genomes]
rs430649	1.00[AFR][1000 genomes]
rs450030	1.00[AFR][1000 genomes]
rs452780	0.83[AFR][1000 genomes]
rs552684	1.00[AFR][1000 genomes]
rs555432	1.00[AFR][1000 genomes]
rs583048	1.00[AFR][1000 genomes]
rs585898	1.00[AFR][1000 genomes]
rs601625	1.00[AFR][1000 genomes]
rs614125	1.00[AFR][1000 genomes]
rs648463	0.83[AFR][1000 genomes]
rs658399	1.00[AFR][1000 genomes]
rs684293	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv546806	chr1:91780408-91875505	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91824800-91852600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:91825000-91852600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:91829800-91852600	Weak transcription	Brain Germinal Matrix	brain
4	chr1:91832000-91852600	Weak transcription	Fetal Heart	heart
5	chr1:91833000-91852600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:91833000-91852600	Weak transcription	Fetal Stomach	stomach
7	chr1:91836800-91852600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:91839000-91852600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:91840400-91852600	Weak transcription	Fetal Kidney	kidney
10	chr1:91840600-91852600	Weak transcription	Ovary	ovary
11	chr1:91840800-91852600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:91840800-91852600	Weak transcription	Fetal Brain Male	brain
13	chr1:91840800-91852600	Weak transcription	Fetal Lung	lung
14	chr1:91841400-91852600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:91843400-91852600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:91847400-91852600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:91847800-91852600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:91848000-91852600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:91848000-91852600	Weak transcription	K562	blood
20	chr1:91849000-91852600	Weak transcription	NHLF	lung
21	chr1:91849200-91852600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:91849200-91852600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:91850000-91852600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:91851600-91852600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:91852200-91852600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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