Variant report

Variant	rs452780
Chromosome Location	chr1:91755014-91755015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1579703	0.83[AFR][1000 genomes]
rs166855	0.83[AFR][1000 genomes]
rs166856	0.83[AFR][1000 genomes]
rs169473	0.83[AFR][1000 genomes]
rs176019	0.83[AFR][1000 genomes]
rs1837543	0.83[AFR][1000 genomes]
rs183988	0.83[AFR][1000 genomes]
rs188153	0.83[AFR][1000 genomes]
rs188154	0.83[AFR][1000 genomes]
rs281936	0.83[AFR][1000 genomes]
rs281938	0.83[AFR][1000 genomes]
rs281940	0.83[AFR][1000 genomes]
rs281941	0.83[AFR][1000 genomes]
rs281945	0.83[AFR][1000 genomes]
rs281946	0.83[AFR][1000 genomes]
rs281947	0.83[AFR][1000 genomes]
rs281949	0.83[AFR][1000 genomes]
rs281951	0.83[AFR][1000 genomes]
rs281952	0.83[AFR][1000 genomes]
rs281954	0.83[AFR][1000 genomes]
rs281960	0.83[AFR][1000 genomes]
rs281961	0.83[AFR][1000 genomes]
rs281962	0.83[AFR][1000 genomes]
rs281963	0.83[AFR][1000 genomes]
rs281964	0.83[AFR][1000 genomes]
rs281965	0.83[AFR][1000 genomes]
rs281967	0.83[AFR][1000 genomes]
rs281969	0.83[AFR][1000 genomes]
rs281970	0.83[AFR][1000 genomes]
rs281971	0.83[AFR][1000 genomes]
rs281972	0.83[AFR][1000 genomes]
rs281974	0.83[AFR][1000 genomes]
rs281975	0.83[AFR][1000 genomes]
rs281976	0.83[AFR][1000 genomes]
rs281980	0.83[AFR][1000 genomes]
rs281981	0.83[AFR][1000 genomes]
rs281982	0.83[AFR][1000 genomes]
rs281983	0.83[AFR][1000 genomes]
rs281987	0.83[AFR][1000 genomes]
rs281989	0.83[AFR][1000 genomes]
rs281991	0.83[AFR][1000 genomes]
rs281993	0.83[AFR][1000 genomes]
rs281994	0.83[AFR][1000 genomes]
rs281995	0.83[AFR][1000 genomes]
rs281999	0.83[AFR][1000 genomes]
rs282002	0.83[AFR][1000 genomes]
rs282006	0.83[AFR][1000 genomes]
rs282009	0.83[AFR][1000 genomes]
rs282015	0.83[AFR][1000 genomes]
rs282016	0.83[AFR][1000 genomes]
rs282018	0.83[AFR][1000 genomes]
rs282019	0.83[AFR][1000 genomes]
rs282022	0.83[AFR][1000 genomes]
rs282024	0.83[AFR][1000 genomes]
rs282025	0.83[AFR][1000 genomes]
rs282026	0.83[AFR][1000 genomes]
rs282027	0.83[AFR][1000 genomes]
rs282028	0.83[AFR][1000 genomes]
rs282029	0.83[AFR][1000 genomes]
rs282030	0.83[AFR][1000 genomes]
rs282031	0.83[AFR][1000 genomes]
rs282033	0.83[AFR][1000 genomes]
rs282035	0.83[AFR][1000 genomes]
rs282036	0.83[AFR][1000 genomes]
rs282037	0.83[AFR][1000 genomes]
rs282039	0.83[AFR][1000 genomes]
rs282040	0.83[AFR][1000 genomes]
rs282041	0.83[AFR][1000 genomes]
rs282051	0.83[AFR][1000 genomes]
rs282052	0.83[AFR][1000 genomes]
rs282055	0.83[AFR][1000 genomes]
rs282059	0.83[AFR][1000 genomes]
rs282060	0.83[AFR][1000 genomes]
rs282061	0.83[AFR][1000 genomes]
rs282062	0.83[AFR][1000 genomes]
rs282063	0.83[AFR][1000 genomes]
rs376322	0.83[AFR][1000 genomes]
rs399362	0.83[AFR][1000 genomes]
rs400641	0.83[AFR][1000 genomes]
rs417209	0.83[AFR][1000 genomes]
rs430649	0.83[AFR][1000 genomes]
rs450030	0.83[AFR][1000 genomes]
rs552684	0.83[AFR][1000 genomes]
rs555432	0.83[AFR][1000 genomes]
rs583048	0.83[AFR][1000 genomes]
rs585898	0.83[AFR][1000 genomes]
rs601625	0.83[AFR][1000 genomes]
rs614125	0.83[AFR][1000 genomes]
rs658399	0.83[AFR][1000 genomes]
rs684293	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91749000-91774600	Weak transcription	Ovary	ovary
2	chr1:91752400-91762200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:91755000-91755200	ZNF genes & repeats	Fetal Stomach	stomach
4	chr1:91755000-91755400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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