Variant report

Variant	rs658399
Chromosome Location	chr1:91718398-91718399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1579703	1.00[AFR][1000 genomes]
rs166855	1.00[AFR][1000 genomes]
rs166856	1.00[AFR][1000 genomes]
rs169473	1.00[AFR][1000 genomes]
rs176019	1.00[AFR][1000 genomes]
rs1837543	1.00[AFR][1000 genomes]
rs183988	1.00[AFR][1000 genomes]
rs188153	1.00[AFR][1000 genomes]
rs188154	1.00[AFR][1000 genomes]
rs281936	1.00[AFR][1000 genomes]
rs281938	1.00[AFR][1000 genomes]
rs281940	1.00[AFR][1000 genomes]
rs281941	1.00[AFR][1000 genomes]
rs281944	0.83[AFR][1000 genomes]
rs281945	1.00[AFR][1000 genomes]
rs281946	1.00[AFR][1000 genomes]
rs281947	1.00[AFR][1000 genomes]
rs281949	1.00[AFR][1000 genomes]
rs281951	1.00[AFR][1000 genomes]
rs281952	1.00[AFR][1000 genomes]
rs281954	1.00[AFR][1000 genomes]
rs281960	1.00[AFR][1000 genomes]
rs281961	1.00[AFR][1000 genomes]
rs281962	1.00[AFR][1000 genomes]
rs281963	1.00[AFR][1000 genomes]
rs281964	1.00[AFR][1000 genomes]
rs281965	1.00[AFR][1000 genomes]
rs281967	1.00[AFR][1000 genomes]
rs281969	1.00[AFR][1000 genomes]
rs281970	1.00[AFR][1000 genomes]
rs281971	1.00[AFR][1000 genomes]
rs281972	1.00[AFR][1000 genomes]
rs281974	1.00[AFR][1000 genomes]
rs281975	1.00[AFR][1000 genomes]
rs281976	1.00[AFR][1000 genomes]
rs281980	1.00[AFR][1000 genomes]
rs281981	1.00[AFR][1000 genomes]
rs281982	1.00[AFR][1000 genomes]
rs281983	1.00[AFR][1000 genomes]
rs281987	1.00[AFR][1000 genomes]
rs281989	1.00[AFR][1000 genomes]
rs281991	1.00[AFR][1000 genomes]
rs281993	1.00[AFR][1000 genomes]
rs281994	1.00[AFR][1000 genomes]
rs281995	1.00[AFR][1000 genomes]
rs281999	1.00[AFR][1000 genomes]
rs282002	1.00[AFR][1000 genomes]
rs282006	1.00[AFR][1000 genomes]
rs282009	1.00[AFR][1000 genomes]
rs282015	1.00[AFR][1000 genomes]
rs282016	1.00[AFR][1000 genomes]
rs282018	1.00[AFR][1000 genomes]
rs282019	1.00[AFR][1000 genomes]
rs282022	1.00[AFR][1000 genomes]
rs282024	1.00[AFR][1000 genomes]
rs282025	1.00[AFR][1000 genomes]
rs282026	1.00[AFR][1000 genomes]
rs282027	1.00[AFR][1000 genomes]
rs282028	1.00[AFR][1000 genomes]
rs282029	1.00[AFR][1000 genomes]
rs282030	1.00[AFR][1000 genomes]
rs282031	1.00[AFR][1000 genomes]
rs282033	1.00[AFR][1000 genomes]
rs282035	1.00[AFR][1000 genomes]
rs282036	1.00[AFR][1000 genomes]
rs282037	1.00[AFR][1000 genomes]
rs282039	1.00[AFR][1000 genomes]
rs282040	1.00[AFR][1000 genomes]
rs282041	1.00[AFR][1000 genomes]
rs282051	1.00[AFR][1000 genomes]
rs282052	1.00[AFR][1000 genomes]
rs282055	1.00[AFR][1000 genomes]
rs282059	1.00[AFR][1000 genomes]
rs282060	1.00[AFR][1000 genomes]
rs282061	1.00[AFR][1000 genomes]
rs282062	1.00[AFR][1000 genomes]
rs282063	1.00[AFR][1000 genomes]
rs376322	1.00[AFR][1000 genomes]
rs399362	1.00[AFR][1000 genomes]
rs400641	1.00[AFR][1000 genomes]
rs417209	1.00[AFR][1000 genomes]
rs430649	1.00[AFR][1000 genomes]
rs450030	1.00[AFR][1000 genomes]
rs452780	0.83[AFR][1000 genomes]
rs552684	1.00[AFR][1000 genomes]
rs555432	1.00[AFR][1000 genomes]
rs583048	1.00[AFR][1000 genomes]
rs585898	1.00[AFR][1000 genomes]
rs601625	1.00[AFR][1000 genomes]
rs614125	1.00[AFR][1000 genomes]
rs648463	0.83[AFR][1000 genomes]
rs684293	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91717000-91743000	Weak transcription	Fetal Lung	lung
2	chr1:91717200-91720800	Weak transcription	Right Ventricle	heart
3	chr1:91717200-91741200	Weak transcription	Fetal Kidney	kidney
4	chr1:91717400-91718600	Weak transcription	Fetal Stomach	stomach
5	chr1:91717600-91721000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:91717600-91725400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:91717800-91723200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:91718000-91719000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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