Variant report

Variant	rs2823082
Chromosome Location	chr21:16510753-16510754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2007783	0.85[AMR][1000 genomes]
rs2823070	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2823075	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2823080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2823084	0.86[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs4817662	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4817666	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
2	chr21:16506600-16512600	Weak transcription	Left Ventricle	heart
3	chr21:16507400-16510800	Weak transcription	Pancreas	Pancrea
4	chr21:16507600-16512000	Weak transcription	Fetal Kidney	kidney
5	chr21:16507600-16513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr21:16508000-16510800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr21:16508000-16514600	Enhancers	Primary hematopoietic stem cells	blood
8	chr21:16508600-16510800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr21:16509000-16510800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr21:16509200-16510800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr21:16509200-16512600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr21:16509200-16512600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr21:16509400-16514600	Enhancers	Fetal Muscle Leg	muscle
14	chr21:16509800-16510800	Enhancers	Duodenum Mucosa	Duodenum
15	chr21:16509800-16514600	Enhancers	Fetal Intestine Small	intestine
16	chr21:16509800-16514800	Enhancers	Fetal Intestine Large	intestine
17	chr21:16510000-16511800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr21:16510000-16512400	Enhancers	Small Intestine	intestine
19	chr21:16510000-16513600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr21:16510000-16513800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr21:16510000-16514400	Enhancers	Brain Germinal Matrix	brain
22	chr21:16510200-16513000	Enhancers	Stomach Mucosa	stomach
23	chr21:16510200-16513600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr21:16510200-16514600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr21:16510400-16512200	Enhancers	HepG2	liver
26	chr21:16510400-16513600	Enhancers	Fetal Brain Male	brain
27	chr21:16510600-16510800	Enhancers	Adipose Nuclei	Adipose
28	chr21:16510600-16511200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr21:16510600-16511800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr21:16510600-16512200	Enhancers	Liver	Liver

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