Variant report

Variant	rs2823075
Chromosome Location	chr21:16505031-16505032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16504814..16505341-chr21:16958945..16959492,2	MCF-7	breast:
2	chr21:16504891..16505709-chr21:16582252..16583395,5	MCF-7	breast:
3	chr21:16504804..16505761-chr21:16545069..16546286,8	MCF-7	breast:
4	chr21:16504811..16505431-chr21:16714538..16715418,2	MCF-7	breast:
5	chr21:16504869..16505637-chr21:16958997..16959745,3	MCF-7	breast:
6	chr21:16503276..16505913-chr9:100819040..100821139,2	MCF-7	breast:
7	chr21:16504749..16505697-chr21:16582211..16583356,5	MCF-7	breast:
8	chr21:16504838..16505677-chr21:16545069..16545649,2	MCF-7	breast:
9	chr21:16504811..16505357-chr21:16544985..16545664,3	MCF-7	breast:
10	chr21:16435087..16439226-chr21:16501116..16506169,12	MCF-7	breast:
11	chr21:16504749..16505697-chr21:16582211..16583356,7	MCF-7	breast:
12	chr21:16436996..16438958-chr21:16502979..16505595,2	MCF-7	breast:
13	chr21:16494297..16496524-chr21:16503683..16505951,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2823070	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2823080	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823082	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2823084	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4817662	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs4817666	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7281527	0.82[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16499800-16506400	Weak transcription	Left Ventricle	heart
2	chr21:16500400-16505800	Weak transcription	Small Intestine	intestine
3	chr21:16500600-16510800	Weak transcription	Psoas Muscle	Psoas
4	chr21:16500800-16505800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr21:16501200-16506000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr21:16501400-16505600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr21:16501800-16506600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr21:16502000-16506200	Enhancers	Primary hematopoietic stem cells	blood
9	chr21:16502200-16506600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr21:16503000-16507200	Weak transcription	HMEC	breast
11	chr21:16504000-16509400	Weak transcription	Fetal Muscle Leg	muscle
12	chr21:16504200-16507400	Enhancers	Placenta	Placenta
13	chr21:16504400-16505200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr21:16504600-16509400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr21:16504800-16507000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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