Variant report

Variant	rs7281527
Chromosome Location	chr21:16514161-16514162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16513967..16515749-chr21:16516008..16517669,2	MCF-7	breast:
2	chr21:16500793..16502464-chr21:16513166..16515545,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12482386	0.82[CEU][hapmap]
rs2007783	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2823075	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2823080	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2823084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823086	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2823091	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4817662	0.86[CEU][hapmap]
rs4817666	0.86[CEU][hapmap]
rs55859143	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16508000-16514600	Enhancers	Primary hematopoietic stem cells	blood
2	chr21:16509400-16514600	Enhancers	Fetal Muscle Leg	muscle
3	chr21:16509800-16514600	Enhancers	Fetal Intestine Small	intestine
4	chr21:16509800-16514800	Enhancers	Fetal Intestine Large	intestine
5	chr21:16510000-16514400	Enhancers	Brain Germinal Matrix	brain
6	chr21:16510200-16514600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr21:16510800-16514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr21:16511200-16516200	Weak transcription	Adipose Nuclei	Adipose
9	chr21:16512000-16514400	Enhancers	Fetal Kidney	kidney
10	chr21:16512400-16514400	Weak transcription	Small Intestine	intestine
11	chr21:16512600-16514200	Enhancers	Brain Cingulate Gyrus	brain
12	chr21:16512800-16514200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr21:16512800-16514200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr21:16512800-16515200	Enhancers	HepG2	liver
15	chr21:16513000-16521600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr21:16513200-16514200	Weak transcription	Pancreas	Pancrea
17	chr21:16513200-16514400	Flanking Active TSS	A549	lung
18	chr21:16513400-16514200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr21:16513400-16514200	Enhancers	Stomach Mucosa	stomach
20	chr21:16513600-16514400	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr21:16513800-16514200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr21:16513800-16514200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr21:16514000-16514200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr21:16514000-16514200	Enhancers	Esophagus	oesophagus
25	chr21:16514000-16514200	Enhancers	Fetal Muscle Trunk	muscle
26	chr21:16514000-16514200	Enhancers	Left Ventricle	heart
27	chr21:16514000-16514600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr21:16514000-16514600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr21:16514000-16515000	Enhancers	Liver	Liver
30	chr21:16514000-16516600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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