Variant report

Variant	rs2830662
Chromosome Location	chr21:28447059-28447060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11911372	0.81[ASN][1000 genomes]
rs1236216	0.81[EUR][1000 genomes]
rs13052896	0.84[EUR][1000 genomes]
rs1603557	0.82[ASN][1000 genomes]
rs1603558	0.80[ASN][1000 genomes]
rs189204	0.85[ASN][1000 genomes]
rs2187293	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2212816	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2212818	0.90[ASN][1000 genomes]
rs233580	0.85[ASN][1000 genomes]
rs233586	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233590	0.87[ASN][1000 genomes]
rs233593	0.90[ASN][1000 genomes]
rs233595	0.90[ASN][1000 genomes]
rs233606	0.81[ASN][1000 genomes]
rs2830645	0.80[ASN][1000 genomes]
rs2830655	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2830659	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2830684	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2830689	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2830698	0.84[EUR][1000 genomes]
rs2849665	0.85[ASN][1000 genomes]
rs371445	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs374915	0.86[ASN][1000 genomes]
rs381814	0.84[ASN][1000 genomes]
rs406835	0.83[ASN][1000 genomes]
rs417783	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs420911	0.83[ASN][1000 genomes]
rs429133	0.82[ASN][1000 genomes]
rs437747	0.83[ASN][1000 genomes]
rs449156	0.83[ASN][1000 genomes]
rs452337	0.84[ASN][1000 genomes]
rs479335	0.84[ASN][1000 genomes]
rs544362	0.80[ASN][1000 genomes]
rs563108	0.80[ASN][1000 genomes]
rs577332	0.85[ASN][1000 genomes]
rs578835	0.81[ASN][1000 genomes]
rs580945	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs656754	0.83[ASN][1000 genomes]
rs658034	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667362	0.85[ASN][1000 genomes]
rs7275831	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7278373	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7278482	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7278648	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7282307	0.89[ASN][1000 genomes]
rs7283146	0.89[ASN][1000 genomes]
rs7283451	0.93[ASN][1000 genomes]
rs9305296	0.89[ASN][1000 genomes]
rs9305299	0.87[ASN][1000 genomes]
rs9980759	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1062808	chr21:28443252-28537209	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv544414	chr21:28443252-28537209	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1063321	chr21:28443774-28460820	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28441000-28449800	Weak transcription	Ovary	ovary
2	chr21:28446800-28447200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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