Variant report

Variant	rs7283146
Chromosome Location	chr21:28433788-28433789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11911372	0.81[ASN][1000 genomes]
rs1603557	0.82[ASN][1000 genomes]
rs1603558	0.80[ASN][1000 genomes]
rs189204	0.85[ASN][1000 genomes]
rs2187293	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2212816	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2212818	0.90[ASN][1000 genomes]
rs233580	0.85[ASN][1000 genomes]
rs233586	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs233590	0.87[ASN][1000 genomes]
rs233593	0.90[ASN][1000 genomes]
rs233595	0.90[ASN][1000 genomes]
rs233606	0.81[ASN][1000 genomes]
rs2830645	0.80[ASN][1000 genomes]
rs2830655	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2830659	0.92[ASN][1000 genomes]
rs2830662	0.89[ASN][1000 genomes]
rs2849665	0.85[ASN][1000 genomes]
rs371445	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs374915	0.86[ASN][1000 genomes]
rs381814	0.84[ASN][1000 genomes]
rs406835	0.83[ASN][1000 genomes]
rs417783	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs420911	0.83[ASN][1000 genomes]
rs429133	0.82[ASN][1000 genomes]
rs437747	0.83[ASN][1000 genomes]
rs449156	0.83[ASN][1000 genomes]
rs452337	0.84[ASN][1000 genomes]
rs479335	0.84[ASN][1000 genomes]
rs544362	0.80[ASN][1000 genomes]
rs563108	0.80[ASN][1000 genomes]
rs577332	0.85[ASN][1000 genomes]
rs578835	0.81[ASN][1000 genomes]
rs580945	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs656754	0.83[ASN][1000 genomes]
rs658034	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667362	0.85[ASN][1000 genomes]
rs7275831	0.92[ASN][1000 genomes]
rs7278373	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7278482	0.93[ASN][1000 genomes]
rs7278648	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7282307	0.92[ASN][1000 genomes]
rs7283451	0.88[ASN][1000 genomes]
rs9305296	0.92[ASN][1000 genomes]
rs9305299	0.84[ASN][1000 genomes]
rs9980759	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28433000-28434000	Weak transcription	Hela-S3	cervix
2	chr21:28433200-28434800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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