Variant report

Variant	rs544362
Chromosome Location	chr21:28422529-28422530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1012766	0.83[ASN][1000 genomes]
rs1041422	0.85[ASN][1000 genomes]
rs11911372	0.86[ASN][1000 genomes]
rs12185828	0.84[ASN][1000 genomes]
rs12626439	0.89[ASN][1000 genomes]
rs13046394	0.84[ASN][1000 genomes]
rs1497276	0.89[ASN][1000 genomes]
rs1603557	0.87[ASN][1000 genomes]
rs1603558	0.85[ASN][1000 genomes]
rs1812603	0.82[ASN][1000 genomes]
rs1812604	0.83[ASN][1000 genomes]
rs189204	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187293	0.85[ASN][1000 genomes]
rs2212816	0.85[ASN][1000 genomes]
rs2212818	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs233579	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs233580	0.82[ASN][1000 genomes]
rs233583	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs233584	0.85[ASN][1000 genomes]
rs233586	0.86[ASN][1000 genomes]
rs233590	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs233593	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs233595	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs233610	0.81[ASN][1000 genomes]
rs233614	0.85[ASN][1000 genomes]
rs233615	0.85[ASN][1000 genomes]
rs233621	0.83[ASN][1000 genomes]
rs233622	0.84[ASN][1000 genomes]
rs2830639	0.81[ASN][1000 genomes]
rs2830641	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2830642	0.83[ASN][1000 genomes]
rs2830643	0.83[ASN][1000 genomes]
rs2830644	0.83[ASN][1000 genomes]
rs2830645	0.85[ASN][1000 genomes]
rs2830649	0.89[ASN][1000 genomes]
rs2830650	0.91[ASN][1000 genomes]
rs2830651	0.91[ASN][1000 genomes]
rs2830655	0.85[ASN][1000 genomes]
rs2830659	0.83[ASN][1000 genomes]
rs2830662	0.80[ASN][1000 genomes]
rs2849665	0.83[ASN][1000 genomes]
rs2849977	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs371445	0.93[ASN][1000 genomes]
rs374915	0.83[ASN][1000 genomes]
rs381814	0.89[ASN][1000 genomes]
rs406835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4143412	0.81[ASN][1000 genomes]
rs417783	0.92[ASN][1000 genomes]
rs420911	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs429133	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs432557	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs437747	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs449156	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs452337	0.89[ASN][1000 genomes]
rs479335	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs563108	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs566699	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs575467	0.83[ASN][1000 genomes]
rs577332	0.83[ASN][1000 genomes]
rs578835	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs580945	0.93[ASN][1000 genomes]
rs6516750	0.82[ASN][1000 genomes]
rs653105	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs656754	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs658034	0.93[ASN][1000 genomes]
rs667362	0.83[ASN][1000 genomes]
rs667756	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs678227	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs680466	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7275831	0.83[ASN][1000 genomes]
rs7278373	0.85[ASN][1000 genomes]
rs7278482	0.84[ASN][1000 genomes]
rs7278648	0.85[ASN][1000 genomes]
rs7279417	0.81[ASN][1000 genomes]
rs7282307	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7283146	0.80[ASN][1000 genomes]
rs7283451	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8126694	0.83[ASN][1000 genomes]
rs8134115	0.85[ASN][1000 genomes]
rs8134126	0.85[ASN][1000 genomes]
rs9305296	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9976168	0.82[ASN][1000 genomes]
rs9979645	0.82[ASN][1000 genomes]
rs9980759	0.84[ASN][1000 genomes]
rs9984610	0.81[ASN][1000 genomes]
rs9984674	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28419800-28424800	Weak transcription	Ovary	ovary
2	chr21:28420600-28426200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:28420600-28431400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr21:28421800-28422600	Weak transcription	Hela-S3	cervix

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