Variant report

Variant	rs28360750
Chromosome Location	chr6:24544293-24544294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24534085..24537392-chr6:24543907..24547453,3	K562	blood:
2	chr6:24541947..24545276-chr6:24695054..24697889,3	MCF-7	breast:
3	chr6:24544075..24545945-chr6:24559657..24561591,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2744548	0.86[EUR][1000 genomes]
rs2744549	0.86[EUR][1000 genomes]
rs2744550	0.86[EUR][1000 genomes]
rs2744558	0.86[EUR][1000 genomes]
rs2744561	0.86[EUR][1000 genomes]
rs2760160	0.86[EUR][1000 genomes]
rs2760161	0.86[EUR][1000 genomes]
rs2760162	0.86[EUR][1000 genomes]
rs2760163	0.86[EUR][1000 genomes]
rs2760164	0.86[EUR][1000 genomes]
rs2760180	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2817191	0.86[EUR][1000 genomes]
rs2817192	0.86[EUR][1000 genomes]
rs2817193	0.86[EUR][1000 genomes]
rs2817194	0.86[EUR][1000 genomes]
rs2817195	0.86[EUR][1000 genomes]
rs6921275	1.00[EUR][1000 genomes]
rs7740941	1.00[EUR][1000 genomes]
rs7744621	1.00[EUR][1000 genomes]
rs7744939	1.00[EUR][1000 genomes]
rs7749794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764860	1.00[EUR][1000 genomes]
rs7768735	1.00[EUR][1000 genomes]
rs7770041	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773122	1.00[EUR][1000 genomes]
rs7773357	1.00[EUR][1000 genomes]
rs9467194	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
3	chr6:24532200-24545000	Weak transcription	K562	blood
4	chr6:24535000-24546200	Weak transcription	Pancreas	Pancrea
5	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
8	chr6:24535400-24550000	Weak transcription	Gastric	stomach
9	chr6:24535600-24546000	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:24535600-24546800	Weak transcription	Dnd41	blood
11	chr6:24535600-24547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
15	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:24537000-24545400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:24537000-24546200	Weak transcription	Fetal Heart	heart
18	chr6:24538200-24544600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:24538200-24545800	Weak transcription	Aorta	Aorta
20	chr6:24538200-24546000	Weak transcription	HepG2	liver
21	chr6:24538200-24547400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:24538400-24547400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
24	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
25	chr6:24540800-24546400	Weak transcription	Liver	Liver
26	chr6:24540800-24547400	Weak transcription	Fetal Thymus	thymus
27	chr6:24540800-24547400	Weak transcription	Thymus	Thymus
28	chr6:24540800-24547600	Weak transcription	Fetal Stomach	stomach

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