Variant report

Variant	rs7744939
Chromosome Location	chr6:24546708-24546709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24546115..24547618-chr6:24548404..24550635,2	K562	blood:
2	chr6:24534085..24537392-chr6:24543907..24547453,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16889633	1.00[CHD][hapmap]
rs1772256	1.00[CHD][hapmap]
rs1923187	1.00[CHD][hapmap]
rs2744548	0.86[EUR][1000 genomes]
rs2744549	1.00[CHD][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2744550	1.00[CHD][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2744558	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2744559	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs2744561	0.86[EUR][1000 genomes]
rs2760160	0.86[EUR][1000 genomes]
rs2760161	0.86[EUR][1000 genomes]
rs2760162	0.86[EUR][1000 genomes]
rs2760163	0.86[EUR][1000 genomes]
rs2760164	0.86[EUR][1000 genomes]
rs2760180	1.00[EUR][1000 genomes]
rs2817191	1.00[CHD][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2817192	0.86[EUR][1000 genomes]
rs2817193	0.86[EUR][1000 genomes]
rs2817194	0.86[EUR][1000 genomes]
rs2817195	1.00[CHD][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs28360750	1.00[EUR][1000 genomes]
rs4472344	1.00[CHD][hapmap]
rs6921275	1.00[EUR][1000 genomes]
rs7740941	1.00[EUR][1000 genomes]
rs7744621	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749794	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751846	1.00[CHD][hapmap]
rs7752186	1.00[CHD][hapmap]
rs7752603	1.00[CHD][hapmap]
rs7760171	1.00[CHD][hapmap]
rs7764860	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768735	1.00[EUR][1000 genomes]
rs7770041	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7772115	1.00[CHD][hapmap]
rs7772540	1.00[CHD][hapmap]
rs7773122	1.00[EUR][1000 genomes]
rs7773357	1.00[EUR][1000 genomes]
rs793656	1.00[CHD][hapmap]
rs9467194	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
4	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
5	chr6:24535400-24550000	Weak transcription	Gastric	stomach
6	chr6:24535600-24546800	Weak transcription	Dnd41	blood
7	chr6:24535600-24547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
9	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
11	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:24538200-24547400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:24538400-24547400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
16	chr6:24540800-24547400	Weak transcription	Fetal Thymus	thymus
17	chr6:24540800-24547400	Weak transcription	Thymus	Thymus
18	chr6:24540800-24547600	Weak transcription	Fetal Stomach	stomach
19	chr6:24546200-24548400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links