Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24590802..24593221-chr6:24599918..24601431,2	K562	blood:
2	chr6:24593795..24596889-chr6:24599933..24601863,3	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16889633	1.00[CHD][hapmap]
rs1772256	1.00[CHD][hapmap]
rs1923187	1.00[CHD][hapmap]
rs2744549	1.00[CHD][hapmap]
rs2744550	1.00[CHD][hapmap]
rs2744559	1.00[CHD][hapmap]
rs2817191	1.00[CHD][hapmap]
rs2817195	1.00[CHD][hapmap]
rs6918210	1.00[CEU][hapmap]
rs73388287	1.00[EUR][1000 genomes]
rs73388299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73388302	0.86[EUR][1000 genomes]
rs73390409	1.00[EUR][1000 genomes]
rs73390421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744621	1.00[CHD][hapmap]
rs7744939	1.00[CHD][hapmap]
rs7749794	1.00[CHD][hapmap]
rs7750537	1.00[CEU][hapmap]
rs7751846	1.00[CHD][hapmap]
rs7752186	1.00[CHD][hapmap]
rs7752603	1.00[CHD][hapmap]
rs7760171	1.00[CHD][hapmap]
rs7762764	1.00[CEU][hapmap]
rs7764860	1.00[CHD][hapmap]
rs7770041	1.00[CHD][hapmap]
rs7772115	1.00[CHD][hapmap]
rs7772540	1.00[CHD][hapmap]
rs793656	1.00[CHD][hapmap]
rs9689908	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:24586800-24601600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24588800-24601600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:24589000-24602200	Weak transcription	Hela-S3	cervix
5	chr6:24601000-24601600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:24601000-24601800	Enhancers	Fetal Brain Female	brain
7	chr6:24601200-24601800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:24601200-24601800	Enhancers	Brain Angular Gyrus	brain
9	chr6:24601200-24601800	Enhancers	Fetal Brain Male	brain
10	chr6:24601200-24602000	Enhancers	Brain Inferior Temporal Lobe	brain

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