Variant report

Variant	rs9689908
Chromosome Location	chr6:24744882-24744883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11968286	1.00[CEU][hapmap]
rs4472344	1.00[CEU][hapmap]
rs6918210	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394549	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750537	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762764	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24742000-24746800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:24742400-24745400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:24743200-24745800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:24743800-24745600	Enhancers	Primary B cells from cord blood	blood
5	chr6:24744000-24745000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:24744000-24745000	Enhancers	HMEC	breast
7	chr6:24744000-24745000	Enhancers	NHLF	lung
8	chr6:24744000-24745600	Enhancers	Hela-S3	cervix
9	chr6:24744200-24745000	Enhancers	NH-A	brain
10	chr6:24744200-24745000	Enhancers	NHDF-Ad	bronchial
11	chr6:24744400-24745000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:24744400-24745600	Enhancers	GM12878-XiMat	blood
13	chr6:24744800-24745000	Enhancers	HSMM	muscle
14	chr6:24744800-24745600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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