Variant report

Variant	rs7762764
Chromosome Location	chr6:24743265-24743266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24719452..24722494-chr6:24742032..24745228,7	K562	blood:
2	chr6:24735694..24737854-chr6:24742539..24745038,3	K562	blood:
3	chr6:24719506..24722494-chr6:24741132..24743826,4	K562	blood:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11968286	1.00[CEU][hapmap]
rs4472344	1.00[CEU][hapmap]
rs6918210	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394549	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750537	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9689908	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24742000-24746800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:24742400-24743400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:24742400-24743800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:24742400-24743800	Enhancers	NHLF	lung
5	chr6:24742400-24744000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:24742400-24745400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:24742600-24743400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:24742600-24743400	Enhancers	HUVEC	blood vessel
9	chr6:24742600-24743600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:24742600-24744000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:24742600-24744000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:24742600-24744000	Flanking Active TSS	Hela-S3	cervix
13	chr6:24742600-24744200	Flanking Active TSS	NH-A	brain
14	chr6:24742800-24743400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:24742800-24743600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:24742800-24743800	Weak transcription	Primary B cells from cord blood	blood
17	chr6:24742800-24744200	Enhancers	Stomach Mucosa	stomach
18	chr6:24742800-24744200	Enhancers	K562	blood
19	chr6:24742800-24744400	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:24743000-24743400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:24743000-24743600	Flanking Active TSS	A549	lung
22	chr6:24743000-24743600	Flanking Active TSS	NHDF-Ad	bronchial
23	chr6:24743000-24744000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:24743000-24744200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr6:24743200-24743400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:24743200-24743600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:24743200-24743600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:24743200-24743600	Flanking Active TSS	HMEC	breast
29	chr6:24743200-24743600	Flanking Active TSS	HSMM	muscle
30	chr6:24743200-24743800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:24743200-24744000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:24743200-24744000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:24743200-24744000	Flanking Active TSS	HSMMtube	muscle
34	chr6:24743200-24744000	Flanking Active TSS	NHEK	skin
35	chr6:24743200-24744200	Flanking Active TSS	Osteobl	bone
36	chr6:24743200-24745800	Enhancers	Primary B cells from peripheral blood	blood

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