Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24567288..24570936-chr6:24575661..24578652,4	K562	blood:
2	chr6:24567136..24568814-chr6:24719709..24721966,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2744548	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2744549	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2744550	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2744552	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2744558	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2744559	0.87[EUR][1000 genomes]
rs2744561	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2744562	0.87[EUR][1000 genomes]
rs2760155	0.87[EUR][1000 genomes]
rs2760156	0.87[EUR][1000 genomes]
rs2760161	1.00[EUR][1000 genomes]
rs2760162	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2760163	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2760164	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2760180	0.86[EUR][1000 genomes]
rs2817191	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2817192	1.00[EUR][1000 genomes]
rs2817193	1.00[EUR][1000 genomes]
rs2817194	1.00[EUR][1000 genomes]
rs2817195	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28360750	0.86[EUR][1000 genomes]
rs6921275	0.86[EUR][1000 genomes]
rs7740941	0.86[EUR][1000 genomes]
rs7744621	0.86[EUR][1000 genomes]
rs7744939	0.86[EUR][1000 genomes]
rs7749794	0.86[EUR][1000 genomes]
rs7764860	0.86[EUR][1000 genomes]
rs7768735	0.86[EUR][1000 genomes]
rs7770041	0.86[EUR][1000 genomes]
rs7773122	0.86[EUR][1000 genomes]
rs7773357	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
3	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24548400-24583400	Weak transcription	A549	lung
6	chr6:24552600-24568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:24559600-24577600	Weak transcription	Pancreas	Pancrea
8	chr6:24562400-24583400	Weak transcription	Right Atrium	heart
9	chr6:24564400-24583400	Weak transcription	Brain Angular Gyrus	brain
10	chr6:24564400-24583400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:24565200-24569600	Weak transcription	Fetal Brain Female	brain
12	chr6:24565200-24570000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:24566800-24568400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:24567000-24568800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:24567000-24569800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:24568000-24568800	Bivalent Enhancer	HepG2	liver

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