Variant report

Variant	rs28360858
Chromosome Location	chr9:136994594-136994595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136924138..136926456-chr9:136992435..136994795,2	MCF-7	breast:
2	chr9:136992413..136997235-chr9:136998349..137003411,7	K562	blood:
3	chr9:136994448..136996074-chr9:136999589..137002197,2	K562	blood:

Variant related genes	Relation type
ENSG00000273249	Chromatin interaction
ENSG00000196363	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs28399690	1.00[EUR][1000 genomes]
rs28401385	1.00[EUR][1000 genomes]
rs28412245	1.00[EUR][1000 genomes]
rs28440102	1.00[EUR][1000 genomes]
rs28452481	1.00[EUR][1000 genomes]
rs28473171	1.00[EUR][1000 genomes]
rs28479377	1.00[EUR][1000 genomes]
rs28491791	1.00[EUR][1000 genomes]
rs28507057	1.00[EUR][1000 genomes]
rs28562957	1.00[EUR][1000 genomes]
rs28579703	1.00[EUR][1000 genomes]
rs28620240	1.00[EUR][1000 genomes]
rs28705689	1.00[EUR][1000 genomes]
rs28708401	1.00[EUR][1000 genomes]
rs28710163	1.00[EUR][1000 genomes]
rs28712382	1.00[EUR][1000 genomes]
rs28714237	1.00[EUR][1000 genomes]
rs28740804	1.00[EUR][1000 genomes]
rs28758854	1.00[EUR][1000 genomes]
rs28759311	1.00[EUR][1000 genomes]
rs34079254	1.00[EUR][1000 genomes]
rs34194763	1.00[EUR][1000 genomes]
rs34473303	1.00[EUR][1000 genomes]
rs34546899	1.00[EUR][1000 genomes]
rs34607253	0.92[EUR][1000 genomes]
rs34646496	1.00[EUR][1000 genomes]
rs34861636	1.00[EUR][1000 genomes]
rs34929179	1.00[EUR][1000 genomes]
rs35209649	1.00[EUR][1000 genomes]
rs35322411	1.00[EUR][1000 genomes]
rs35387289	1.00[EUR][1000 genomes]
rs35419030	1.00[EUR][1000 genomes]
rs35448798	1.00[EUR][1000 genomes]
rs35487246	0.84[EUR][1000 genomes]
rs35489314	1.00[EUR][1000 genomes]
rs35504753	1.00[EUR][1000 genomes]
rs35511305	1.00[EUR][1000 genomes]
rs35709000	1.00[EUR][1000 genomes]
rs35726748	1.00[EUR][1000 genomes]
rs35924689	1.00[EUR][1000 genomes]
rs71483222	1.00[EUR][1000 genomes]
rs71505283	1.00[EUR][1000 genomes]
rs71505284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv6751	chr9:136967475-137007131	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
9	esv1793302	chr9:136990615-137390602	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136990000-136994800	Weak transcription	Hela-S3	cervix
2	chr9:136990400-136994600	Enhancers	Spleen	Spleen
3	chr9:136990800-136996200	Enhancers	Fetal Muscle Leg	muscle
4	chr9:136991000-136999400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:136991200-136996000	Weak transcription	Pancreas	Pancrea
6	chr9:136992400-136994600	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:136992800-136996600	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:136993600-136995400	Enhancers	HSMMtube	muscle
9	chr9:136994000-136995200	Enhancers	Esophagus	oesophagus
10	chr9:136994000-136995400	Enhancers	Placenta	Placenta
11	chr9:136994000-136995400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr9:136994000-136995400	Enhancers	HSMM	muscle
13	chr9:136994200-136994600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:136994200-136994800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr9:136994200-136995000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:136994200-136995000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:136994200-136995200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:136994200-136995200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:136994200-136995400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:136994400-136994600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:136994400-136995000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:136994400-136995000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr9:136994400-136995400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr9:136994400-136995800	Enhancers	HepG2	liver
25	chr9:136994400-136996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:136994400-136996000	Enhancers	Stomach Smooth Muscle	stomach
27	chr9:136994400-136996200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:136994400-136996400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:136994400-136999400	Weak transcription	Primary B cells from cord blood	blood

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