Variant report

Variant	rs35487246
Chromosome Location	chr9:136990431-136990432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:136931852..136933427-chr9:136988020..136990522,2	MCF-7	breast:
2	chr9:136987581..136991620-chr9:136999080..137002104,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169925	Chromatin interaction
ENSG00000273249	Chromatin interaction
ENSG00000196363	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs28360858	0.84[EUR][1000 genomes]
rs28399690	0.84[EUR][1000 genomes]
rs28401385	0.84[EUR][1000 genomes]
rs28412245	0.84[EUR][1000 genomes]
rs28440102	0.84[EUR][1000 genomes]
rs28452481	0.84[EUR][1000 genomes]
rs28473171	0.84[EUR][1000 genomes]
rs28479377	0.84[EUR][1000 genomes]
rs28491791	0.84[EUR][1000 genomes]
rs28507057	0.84[EUR][1000 genomes]
rs28562957	0.84[EUR][1000 genomes]
rs28579703	0.84[EUR][1000 genomes]
rs28620240	0.84[EUR][1000 genomes]
rs28705689	0.84[EUR][1000 genomes]
rs28708401	0.84[EUR][1000 genomes]
rs28710163	0.84[EUR][1000 genomes]
rs28712382	0.84[EUR][1000 genomes]
rs28714237	0.84[EUR][1000 genomes]
rs28740804	0.84[EUR][1000 genomes]
rs28758854	0.84[EUR][1000 genomes]
rs28759311	0.84[EUR][1000 genomes]
rs34079254	0.84[EUR][1000 genomes]
rs34194763	0.84[EUR][1000 genomes]
rs34473303	0.84[EUR][1000 genomes]
rs34546899	0.84[EUR][1000 genomes]
rs34646496	0.84[EUR][1000 genomes]
rs34861636	0.84[EUR][1000 genomes]
rs34929179	0.84[EUR][1000 genomes]
rs35209649	0.84[EUR][1000 genomes]
rs35322411	0.84[EUR][1000 genomes]
rs35387289	0.84[EUR][1000 genomes]
rs35419030	0.84[EUR][1000 genomes]
rs35448798	0.84[EUR][1000 genomes]
rs35489314	0.84[EUR][1000 genomes]
rs35504753	0.84[EUR][1000 genomes]
rs35511305	0.84[EUR][1000 genomes]
rs35709000	0.84[EUR][1000 genomes]
rs35726748	0.84[EUR][1000 genomes]
rs35924689	0.84[EUR][1000 genomes]
rs71483222	0.84[EUR][1000 genomes]
rs71505283	0.84[EUR][1000 genomes]
rs71505284	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv466630	chr9:136925451-136991034	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv615780	chr9:136925451-136991034	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv466631	chr9:136944827-136993590	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv615801	chr9:136944827-136993590	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv972462	chr9:136967281-136992279	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv6751	chr9:136967475-137007131	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136988600-136990600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:136989800-136990600	Bivalent Enhancer	HepG2	liver
3	chr9:136990000-136994800	Weak transcription	Hela-S3	cervix
4	chr9:136990400-136990800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:136990400-136991200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:136990400-136994600	Enhancers	Spleen	Spleen

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