Variant report

Variant	rs35322411
Chromosome Location	chr9:137031909-137031910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:137029266-137031976	Raji	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:137030110..137032230-chr9:137037095..137040393,3	MCF-7	breast:
2	chr9:136999027..137003702-chr9:137026566..137032835,8	MCF-7	breast:
3	chr9:137030619..137032404-chr9:137216540..137218140,2	MCF-7	breast:
4	chr9:137031243..137033448-chr9:137219820..137221511,2	MCF-7	breast:
5	chr9:137030558..137032769-chr9:137303560..137307108,5	MCF-7	breast:
6	chr9:137030448..137032134-chr9:137229011..137230599,2	K562	blood:
7	chr9:137029897..137032228-chr9:137170817..137173611,2	MCF-7	breast:
8	chr9:137028543..137032380-chr9:137216254..137220347,4	K562	blood:
9	chr9:137030267..137032802-chr9:137338931..137341494,3	MCF-7	breast:
10	chr9:137030752..137033334-chr9:137269071..137271335,2	MCF-7	breast:
11	chr9:137028423..137041755-chr9:137210581..137221866,35	MCF-7	breast:
12	chr9:136997943..137000936-chr9:137029556..137031957,3	K562	blood:

No data

Variant related genes	Relation type
RNU6ATAC	TF binding region
ENSG00000273473	TF binding region
ENSG00000263897	Chromatin interaction
ENSG00000196363	Chromatin interaction
ENSG00000186350	Chromatin interaction
ENSG00000273249	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs28360858	1.00[EUR][1000 genomes]
rs28399690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28401385	1.00[EUR][1000 genomes]
rs28412245	1.00[EUR][1000 genomes]
rs28440102	1.00[EUR][1000 genomes]
rs28452481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473171	1.00[EUR][1000 genomes]
rs28479377	1.00[EUR][1000 genomes]
rs28491791	1.00[EUR][1000 genomes]
rs28507057	1.00[EUR][1000 genomes]
rs28562957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28579703	1.00[EUR][1000 genomes]
rs28620240	1.00[EUR][1000 genomes]
rs28705689	1.00[EUR][1000 genomes]
rs28708401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28710163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28712382	1.00[EUR][1000 genomes]
rs28714237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28740804	1.00[EUR][1000 genomes]
rs28758854	1.00[EUR][1000 genomes]
rs28759311	1.00[EUR][1000 genomes]
rs34079254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34194763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34473303	1.00[EUR][1000 genomes]
rs34546899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34607253	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34646496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34861636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34929179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35209649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35387289	1.00[EUR][1000 genomes]
rs35419030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35448798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35487246	0.84[EUR][1000 genomes]
rs35489314	1.00[EUR][1000 genomes]
rs35504753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35511305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35709000	1.00[EUR][1000 genomes]
rs35726748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35924689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71483222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71505283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71505284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
6	esv1793302	chr9:136990615-137390602	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:137030800-137032600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:137030800-137035600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:137030800-137036000	Weak transcription	Fetal Kidney	kidney
4	chr9:137030800-137036200	Weak transcription	Right Atrium	heart
5	chr9:137030800-137040000	Weak transcription	Small Intestine	intestine
6	chr9:137031000-137032600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:137031000-137032600	Weak transcription	NH-A	brain
8	chr9:137031000-137034400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:137031000-137034800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:137031000-137035800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:137031000-137036000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:137031000-137036000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:137031000-137036200	Weak transcription	NHDF-Ad	bronchial
14	chr9:137031000-137037400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:137031000-137040200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:137031200-137032000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:137031200-137032200	Weak transcription	Fetal Stomach	stomach
18	chr9:137031200-137032400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:137031200-137032600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:137031200-137032600	Weak transcription	Fetal Intestine Large	intestine
21	chr9:137031200-137032600	Weak transcription	A549	lung
22	chr9:137031200-137032600	Weak transcription	HSMMtube	muscle
23	chr9:137031200-137032600	Weak transcription	NHLF	lung
24	chr9:137031200-137032600	Weak transcription	Osteobl	bone
25	chr9:137031200-137032800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:137031200-137032800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:137031200-137033200	Weak transcription	Fetal Intestine Small	intestine
28	chr9:137031200-137033800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:137031200-137034800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:137031200-137034800	Weak transcription	Stomach Mucosa	stomach
31	chr9:137031200-137035400	Weak transcription	Ovary	ovary
32	chr9:137031200-137035800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:137031200-137035800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:137031200-137036000	Weak transcription	Primary B cells from cord blood	blood
35	chr9:137031200-137036000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:137031200-137036000	Weak transcription	Right Ventricle	heart
37	chr9:137031200-137036200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:137031200-137036200	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:137031200-137039800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:137031200-137040600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:137031400-137032200	Weak transcription	Hela-S3	cervix
42	chr9:137031400-137032400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:137031400-137032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:137031400-137032600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:137031400-137033000	Weak transcription	Thymus	Thymus
46	chr9:137031400-137033800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:137031400-137033800	Weak transcription	Liver	Liver
48	chr9:137031400-137033800	Weak transcription	Fetal Muscle Leg	muscle
49	chr9:137031400-137034000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr9:137031400-137034200	Weak transcription	HepG2	liver

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