Variant report

Variant	rs28361918
Chromosome Location	chr8:87463638-87463639
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10090107	0.81[AFR][1000 genomes]
rs10099858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107469	0.95[AFR][1000 genomes]
rs11994220	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28593581	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60177164	0.86[AFR][1000 genomes]
rs7012745	0.99[AFR][1000 genomes]
rs73254771	0.90[AFR][1000 genomes]
rs73273124	0.81[AFR][1000 genomes]
rs7461904	0.94[AFR][1000 genomes]
rs7464360	0.83[AFR][1000 genomes]
rs9656828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87427600-87485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87436800-87483200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr8:87437400-87482800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:87437800-87489600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:87441800-87507600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:87442800-87475600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:87443000-87478800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:87444400-87488800	Weak transcription	NHLF	lung
9	chr8:87447200-87476800	Weak transcription	Gastric	stomach
10	chr8:87447200-87476800	Weak transcription	Spleen	Spleen
11	chr8:87448400-87476800	Weak transcription	Aorta	Aorta
12	chr8:87448800-87481400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:87448800-87502800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:87449400-87476800	Weak transcription	Lung	lung
15	chr8:87449600-87480800	Weak transcription	Right Ventricle	heart
16	chr8:87451600-87477600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:87451800-87485400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr8:87452000-87472800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:87453200-87468800	Strong transcription	Primary B cells from cord blood	blood
20	chr8:87453200-87482600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:87453200-87488600	Weak transcription	HSMMtube	muscle
22	chr8:87453400-87475800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:87453400-87492000	Strong transcription	Adipose Nuclei	Adipose
24	chr8:87453600-87482400	Weak transcription	Fetal Brain Female	brain
25	chr8:87454000-87467800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:87454000-87472400	Weak transcription	Stomach Mucosa	stomach
27	chr8:87454600-87469000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:87455000-87465000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:87456000-87465600	Weak transcription	Fetal Muscle Leg	muscle
30	chr8:87457400-87480800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:87457400-87507400	Weak transcription	Brain Angular Gyrus	brain
32	chr8:87457800-87465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:87457800-87473000	Weak transcription	Pancreas	Pancrea
34	chr8:87457800-87481000	Weak transcription	Esophagus	oesophagus
35	chr8:87457800-87492000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr8:87458000-87463800	Weak transcription	Thymus	Thymus
37	chr8:87458000-87480800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:87458800-87483400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:87458800-87486200	Strong transcription	Liver	Liver
40	chr8:87459000-87468200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:87459000-87482800	Strong transcription	Placenta	Placenta
42	chr8:87459000-87483200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr8:87459200-87467000	Strong transcription	Left Ventricle	heart
44	chr8:87459200-87467600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr8:87459200-87468400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:87459200-87469400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr8:87459200-87483000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:87459200-87499600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:87459400-87464400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:87459400-87466400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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