Variant report

Variant	rs7461904
Chromosome Location	chr8:87452318-87452319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10090107	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10099858	0.97[AFR][1000 genomes]
rs10101337	0.88[EUR][1000 genomes]
rs10101658	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10106735	0.88[EUR][1000 genomes]
rs10107469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994220	0.95[AFR][1000 genomes]
rs16907490	0.88[EUR][1000 genomes]
rs16911667	0.88[EUR][1000 genomes]
rs16912199	0.88[EUR][1000 genomes]
rs16914543	0.88[EUR][1000 genomes]
rs28361918	0.94[AFR][1000 genomes]
rs28446298	0.88[EUR][1000 genomes]
rs28504305	0.88[EUR][1000 genomes]
rs28593581	0.83[AFR][1000 genomes]
rs28801137	0.88[EUR][1000 genomes]
rs3916649	0.88[EUR][1000 genomes]
rs56280479	0.88[EUR][1000 genomes]
rs60177164	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61661701	0.88[EUR][1000 genomes]
rs7012745	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254743	0.88[EUR][1000 genomes]
rs73254771	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73257062	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73271003	0.88[EUR][1000 genomes]
rs73273124	1.00[EUR][1000 genomes]
rs73688826	0.88[EUR][1000 genomes]
rs7464360	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812422	0.88[EUR][1000 genomes]
rs7839610	0.88[EUR][1000 genomes]
rs7841007	0.88[EUR][1000 genomes]
rs7841939	0.88[EUR][1000 genomes]
rs9656826	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9656828	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87427400-87452600	Weak transcription	HSMMtube	muscle
2	chr8:87427600-87485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:87428600-87460800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:87429400-87453600	Weak transcription	Stomach Mucosa	stomach
5	chr8:87436800-87483200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr8:87437400-87452600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:87437400-87453000	Strong transcription	Liver	Liver
8	chr8:87437400-87456400	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr8:87437400-87457800	Strong transcription	Fetal Thymus	thymus
10	chr8:87437400-87458000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:87437400-87458000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:87437400-87458200	Strong transcription	Placenta	Placenta
13	chr8:87437400-87482800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:87437800-87489600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr8:87438000-87457800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr8:87438600-87452600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:87439600-87454200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr8:87441800-87507600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:87442200-87454800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:87442800-87475600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:87443000-87478800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:87443400-87452800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr8:87443400-87455000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:87443400-87457800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:87443600-87452400	Strong transcription	Primary hematopoietic stem cells	blood
26	chr8:87443600-87453800	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:87443600-87453800	Strong transcription	HSMM	muscle
28	chr8:87443600-87454200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:87443600-87457600	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr8:87443600-87458200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:87443600-87458200	Strong transcription	HepG2	liver
32	chr8:87443600-87459400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:87443800-87454000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:87443800-87454200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr8:87443800-87455000	Strong transcription	Fetal Kidney	kidney
36	chr8:87444400-87488800	Weak transcription	NHLF	lung
37	chr8:87445800-87461000	Weak transcription	Small Intestine	intestine
38	chr8:87446000-87452600	Weak transcription	Brain Germinal Matrix	brain
39	chr8:87446200-87454200	Strong transcription	NH-A	brain
40	chr8:87446200-87454400	Strong transcription	Osteobl	bone
41	chr8:87446400-87452600	Strong transcription	NHDF-Ad	bronchial
42	chr8:87446800-87458200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr8:87446800-87458600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr8:87447200-87461000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:87447200-87476800	Weak transcription	Gastric	stomach
46	chr8:87447200-87476800	Weak transcription	Spleen	Spleen
47	chr8:87447600-87453400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr8:87447600-87458000	Strong transcription	Fetal Intestine Large	intestine
49	chr8:87448200-87457200	Weak transcription	Esophagus	oesophagus
50	chr8:87448200-87460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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