Variant report

Variant	rs7841939
Chromosome Location	chr8:87370775-87370776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87369363..87371894-chr8:87375149..87378273,3	MCF-7	breast:
2	chr8:87369968..87373352-chr8:87375250..87380185,4	MCF-7	breast:
3	chr8:87369687..87371577-chr8:87385919..87388525,2	K562	blood:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090107	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101280	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10101337	1.00[EUR][1000 genomes]
rs10101658	0.88[EUR][1000 genomes]
rs10106735	1.00[EUR][1000 genomes]
rs10107469	0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs16907490	1.00[EUR][1000 genomes]
rs16911667	1.00[EUR][1000 genomes]
rs16912199	1.00[EUR][1000 genomes]
rs16914543	1.00[EUR][1000 genomes]
rs28446298	1.00[EUR][1000 genomes]
rs28504305	1.00[EUR][1000 genomes]
rs28801137	1.00[EUR][1000 genomes]
rs3916649	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56280479	1.00[EUR][1000 genomes]
rs60177164	1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.88[EUR][1000 genomes]
rs73254743	1.00[EUR][1000 genomes]
rs73254771	0.88[EUR][1000 genomes]
rs73257062	0.88[EUR][1000 genomes]
rs73271003	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273124	0.88[EUR][1000 genomes]
rs73688826	1.00[EUR][1000 genomes]
rs7461904	0.88[EUR][1000 genomes]
rs7464360	0.88[EUR][1000 genomes]
rs7812422	1.00[EUR][1000 genomes]
rs7839610	1.00[EUR][1000 genomes]
rs7841007	1.00[EUR][1000 genomes]
rs9656826	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87356800-87403800	Weak transcription	Aorta	Aorta
3	chr8:87357000-87375600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:87357400-87372600	Weak transcription	Fetal Intestine Small	intestine
5	chr8:87357400-87403400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:87357600-87374600	Weak transcription	HUVEC	blood vessel
7	chr8:87357600-87382200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:87357800-87381000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:87357800-87382000	Weak transcription	Placenta	Placenta
10	chr8:87357800-87383200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
12	chr8:87359000-87383600	Weak transcription	Dnd41	blood
13	chr8:87359800-87372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:87362400-87378200	Weak transcription	Gastric	stomach
15	chr8:87363600-87372600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:87363800-87393800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:87364000-87371000	Weak transcription	Psoas Muscle	Psoas
18	chr8:87364000-87397400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:87364200-87372600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:87364200-87373200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:87364800-87370800	Weak transcription	Left Ventricle	heart
22	chr8:87364800-87371600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr8:87365000-87372600	Weak transcription	Right Ventricle	heart
24	chr8:87366000-87372600	Weak transcription	Small Intestine	intestine
25	chr8:87366000-87398200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:87366400-87372600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:87366800-87423800	Weak transcription	Colonic Mucosa	Colon
28	chr8:87367400-87375200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:87368000-87382600	Weak transcription	Brain Anterior Caudate	brain
30	chr8:87368200-87379600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:87368200-87384600	Weak transcription	Fetal Intestine Large	intestine
32	chr8:87368200-87386600	Weak transcription	Hela-S3	cervix
33	chr8:87368400-87371200	Weak transcription	HepG2	liver
34	chr8:87368400-87381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:87368600-87371200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr8:87368600-87371800	Enhancers	Liver	Liver
37	chr8:87368600-87374600	Weak transcription	NHEK	skin
38	chr8:87368600-87375400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:87369000-87372400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr8:87369000-87372400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:87369000-87372600	Weak transcription	Adipose Nuclei	Adipose
42	chr8:87369000-87373000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr8:87369000-87373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:87369000-87373800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:87369000-87378400	Weak transcription	Brain Angular Gyrus	brain
46	chr8:87369200-87373200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr8:87369200-87384600	Weak transcription	Primary B cells from cord blood	blood
48	chr8:87369400-87372800	Weak transcription	Primary T cells from cord blood	blood
49	chr8:87369400-87372800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr8:87369400-87373200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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