Variant report

Variant	rs7841007
Chromosome Location	chr8:87406362-87406363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87397038..87400131-chr8:87405307..87410193,4	MCF-7	breast:
2	chr8:87403636..87405569-chr8:87405611..87408254,2	MCF-7	breast:
3	chr8:87378503..87381447-chr8:87404870..87407251,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10090107	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10101280	0.89[EUR][1000 genomes]
rs10101337	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101658	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10106735	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107469	0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs16907490	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16911667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912199	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914543	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28446298	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28504305	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28593581	0.81[AFR][1000 genomes]
rs28801137	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3916649	1.00[EUR][1000 genomes]
rs56280479	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60177164	1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.88[EUR][1000 genomes]
rs73254743	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254771	0.88[EUR][1000 genomes]
rs73257062	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73271003	1.00[EUR][1000 genomes]
rs73271015	0.85[AFR][1000 genomes]
rs73273124	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73688826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7461904	0.88[EUR][1000 genomes]
rs7464360	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7812422	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841939	1.00[EUR][1000 genomes]
rs9656826	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
2	chr8:87366800-87423800	Weak transcription	Colonic Mucosa	Colon
3	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
4	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:87381200-87425600	Weak transcription	K562	blood
6	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:87383000-87415000	Weak transcription	NHDF-Ad	bronchial
8	chr8:87385000-87438000	Weak transcription	Fetal Brain Male	brain
9	chr8:87388200-87410600	Weak transcription	HMEC	breast
10	chr8:87388200-87415200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:87388400-87430600	Weak transcription	Fetal Kidney	kidney
12	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
13	chr8:87392200-87409000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:87392400-87407000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:87396200-87415600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:87397400-87431200	Weak transcription	Fetal Brain Female	brain
17	chr8:87398800-87425800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:87399400-87406400	Weak transcription	Primary B cells from cord blood	blood
19	chr8:87399400-87406600	Weak transcription	Ovary	ovary
20	chr8:87399400-87413600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:87399600-87423400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr8:87399800-87429000	Weak transcription	Thymus	Thymus
23	chr8:87400400-87423800	Weak transcription	GM12878-XiMat	blood
24	chr8:87400800-87406400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr8:87400800-87409800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:87400800-87424000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:87401000-87409000	Weak transcription	HepG2	liver
28	chr8:87401400-87414600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr8:87402400-87420600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:87402400-87425400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:87402800-87407400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr8:87402800-87408800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:87402800-87412600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:87403000-87406400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:87403000-87407400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:87403000-87408400	Weak transcription	Fetal Intestine Small	intestine
37	chr8:87403000-87408400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:87403000-87408800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:87403000-87408800	Weak transcription	Spleen	Spleen
40	chr8:87403000-87420800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:87403000-87429000	Weak transcription	Gastric	stomach
42	chr8:87403000-87430600	Weak transcription	Esophagus	oesophagus
43	chr8:87404200-87406400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:87404200-87407400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:87404200-87414200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr8:87404200-87426600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr8:87404200-87440600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr8:87404400-87406400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr8:87404400-87409000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:87404400-87410800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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