Variant report

Variant	rs73271015
Chromosome Location	chr8:87404983-87404984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87403636..87405569-chr8:87405611..87408254,2	MCF-7	breast:
2	chr8:87378503..87381447-chr8:87404870..87407251,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10107265	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16911667	0.81[AFR][1000 genomes]
rs28451965	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41333046	1.00[EUR][1000 genomes]
rs73265765	1.00[EUR][1000 genomes]
rs73271448	1.00[EUR][1000 genomes]
rs7812422	0.84[AFR][1000 genomes]
rs7841007	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
3	chr8:87366800-87423800	Weak transcription	Colonic Mucosa	Colon
4	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
5	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:87381200-87425600	Weak transcription	K562	blood
7	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:87383000-87406000	Weak transcription	HUVEC	blood vessel
9	chr8:87383000-87415000	Weak transcription	NHDF-Ad	bronchial
10	chr8:87385000-87438000	Weak transcription	Fetal Brain Male	brain
11	chr8:87388200-87410600	Weak transcription	HMEC	breast
12	chr8:87388200-87415200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:87388400-87406200	Weak transcription	HSMM	muscle
14	chr8:87388400-87430600	Weak transcription	Fetal Kidney	kidney
15	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
16	chr8:87392200-87409000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr8:87392400-87407000	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:87395400-87406000	Weak transcription	Hela-S3	cervix
19	chr8:87396200-87415600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr8:87396400-87406000	Weak transcription	Left Ventricle	heart
21	chr8:87397400-87431200	Weak transcription	Fetal Brain Female	brain
22	chr8:87398800-87425800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr8:87399200-87406000	Weak transcription	A549	lung
24	chr8:87399400-87405600	Weak transcription	Fetal Thymus	thymus
25	chr8:87399400-87406400	Weak transcription	Primary B cells from cord blood	blood
26	chr8:87399400-87406600	Weak transcription	Ovary	ovary
27	chr8:87399400-87413600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:87399600-87423400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr8:87399800-87429000	Weak transcription	Thymus	Thymus
30	chr8:87400000-87406000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:87400200-87406000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:87400400-87406000	Weak transcription	Adipose Nuclei	Adipose
33	chr8:87400400-87423800	Weak transcription	GM12878-XiMat	blood
34	chr8:87400600-87405800	Weak transcription	Primary T cells from cord blood	blood
35	chr8:87400800-87405400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:87400800-87406000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr8:87400800-87406000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:87400800-87406400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr8:87400800-87409800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:87400800-87424000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:87401000-87409000	Weak transcription	HepG2	liver
42	chr8:87401200-87406000	Weak transcription	NHEK	skin
43	chr8:87401400-87414600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr8:87402400-87405600	Weak transcription	Lung	lung
45	chr8:87402400-87420600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr8:87402400-87425400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr8:87402600-87405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:87402800-87405400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr8:87402800-87407400	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr8:87402800-87408800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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