Variant report

Variant	rs7812422
Chromosome Location	chr8:87399470-87399471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87397038..87400131-chr8:87405307..87410193,4	MCF-7	breast:
2	chr8:87396168..87398417-chr8:87398734..87401130,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10090107	1.00[EUR][1000 genomes]
rs10101280	0.89[EUR][1000 genomes]
rs10101337	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101658	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10106735	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107469	0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs16907490	1.00[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16911667	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912199	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914543	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28446298	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28504305	1.00[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28801137	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3916649	1.00[EUR][1000 genomes]
rs56280479	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60177164	1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.88[EUR][1000 genomes]
rs73254743	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254771	0.88[EUR][1000 genomes]
rs73257062	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73271003	1.00[EUR][1000 genomes]
rs73271015	0.84[AFR][1000 genomes]
rs73273124	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73688826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7461904	0.88[EUR][1000 genomes]
rs7464360	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7839610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841007	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841939	1.00[EUR][1000 genomes]
rs9656826	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87356800-87403800	Weak transcription	Aorta	Aorta
3	chr8:87357400-87403400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
5	chr8:87366800-87423800	Weak transcription	Colonic Mucosa	Colon
6	chr8:87375600-87403000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:87378600-87402200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:87378600-87402200	Weak transcription	Spleen	Spleen
9	chr8:87378800-87403800	Weak transcription	Psoas Muscle	Psoas
10	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
11	chr8:87379800-87403800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:87380400-87401800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:87380800-87403600	Weak transcription	Stomach Mucosa	stomach
14	chr8:87381000-87403600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:87381000-87404000	Weak transcription	Small Intestine	intestine
16	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:87381200-87425600	Weak transcription	K562	blood
18	chr8:87382400-87401800	Weak transcription	Lung	lung
19	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:87383000-87403200	Weak transcription	Osteobl	bone
21	chr8:87383000-87406000	Weak transcription	HUVEC	blood vessel
22	chr8:87383000-87415000	Weak transcription	NHDF-Ad	bronchial
23	chr8:87383400-87404400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:87385000-87438000	Weak transcription	Fetal Brain Male	brain
25	chr8:87386000-87403800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:87386200-87403600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr8:87386400-87401200	Strong transcription	Placenta	Placenta
28	chr8:87387400-87403200	Weak transcription	NH-A	brain
29	chr8:87388200-87400000	Weak transcription	NHEK	skin
30	chr8:87388200-87403400	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:87388200-87410600	Weak transcription	HMEC	breast
32	chr8:87388200-87415200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr8:87388400-87406200	Weak transcription	HSMM	muscle
34	chr8:87388400-87430600	Weak transcription	Fetal Kidney	kidney
35	chr8:87388600-87399800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
37	chr8:87389000-87401800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:87389000-87403400	Weak transcription	Brain Angular Gyrus	brain
39	chr8:87389400-87404400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr8:87391000-87400800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:87391000-87401400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:87391000-87401400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr8:87391000-87403400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:87391800-87403400	Weak transcription	Brain Anterior Caudate	brain
45	chr8:87392200-87401800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr8:87392200-87409000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr8:87392400-87404400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:87392400-87407000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr8:87392800-87401400	Strong transcription	Dnd41	blood
50	chr8:87393000-87400400	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links