Variant report

Variant	rs3916649
Chromosome Location	chr8:87362092-87362093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87160636..87162188-chr8:87360256..87362719,2	MCF-7	breast:
2	chr8:87361399..87363521-chr8:87414046..87416570,2	K562	blood:
3	chr8:87135891..87139399-chr8:87360674..87363160,4	MCF-7	breast:
4	chr8:87211551..87214169-chr8:87359598..87362232,2	MCF-7	breast:
5	chr8:87361670..87363931-chr8:87364604..87369462,4	K562	blood:
6	chr8:87361970..87363918-chr8:87368316..87370352,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090107	1.00[EUR][1000 genomes]
rs10101280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10101337	1.00[EUR][1000 genomes]
rs10101658	0.88[EUR][1000 genomes]
rs10106735	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs10107469	0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs16907490	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16911667	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs16912199	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs16914543	1.00[EUR][1000 genomes]
rs28446298	1.00[EUR][1000 genomes]
rs28504305	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs28801137	1.00[EUR][1000 genomes]
rs56280479	1.00[EUR][1000 genomes]
rs60177164	1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.88[EUR][1000 genomes]
rs73254743	1.00[EUR][1000 genomes]
rs73254771	0.88[EUR][1000 genomes]
rs73257062	0.88[EUR][1000 genomes]
rs73271003	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273124	0.88[EUR][1000 genomes]
rs73688826	1.00[EUR][1000 genomes]
rs7461904	0.88[EUR][1000 genomes]
rs7464360	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7812422	1.00[EUR][1000 genomes]
rs7839610	1.00[EUR][1000 genomes]
rs7841007	1.00[EUR][1000 genomes]
rs7841939	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656826	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017535	chr8:87261702-87367934	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87363600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:87355800-87363800	Weak transcription	Esophagus	oesophagus
3	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:87356800-87403800	Weak transcription	Aorta	Aorta
5	chr8:87357000-87362800	Weak transcription	Fetal Kidney	kidney
6	chr8:87357000-87366400	Weak transcription	Fetal Lung	lung
7	chr8:87357000-87375600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:87357200-87365000	Weak transcription	Brain Substantia Nigra	brain
9	chr8:87357200-87366000	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:87357200-87368800	Weak transcription	Primary B cells from cord blood	blood
11	chr8:87357200-87369600	Weak transcription	HSMM	muscle
12	chr8:87357400-87362200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:87357400-87362800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:87357400-87363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:87357400-87363000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr8:87357400-87364400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr8:87357400-87364600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:87357400-87364600	Weak transcription	Lung	lung
19	chr8:87357400-87367200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:87357400-87368000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:87357400-87372600	Weak transcription	Fetal Intestine Small	intestine
22	chr8:87357400-87403400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:87357600-87362600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:87357600-87364200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr8:87357600-87364800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:87357600-87364800	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:87357600-87364800	Weak transcription	K562	blood
28	chr8:87357600-87366000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:87357600-87368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:87357600-87368800	Weak transcription	Brain Angular Gyrus	brain
31	chr8:87357600-87374600	Weak transcription	HUVEC	blood vessel
32	chr8:87357600-87382200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr8:87357800-87362200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:87357800-87362400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:87357800-87367400	Weak transcription	Fetal Intestine Large	intestine
36	chr8:87357800-87368600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr8:87357800-87381000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:87357800-87382000	Weak transcription	Placenta	Placenta
39	chr8:87357800-87383200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
41	chr8:87358000-87362800	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:87358000-87363400	Weak transcription	Left Ventricle	heart
43	chr8:87358000-87363400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:87358000-87363800	Weak transcription	Ovary	ovary
45	chr8:87358000-87366600	Weak transcription	Colonic Mucosa	Colon
46	chr8:87358000-87369000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr8:87358200-87362200	Weak transcription	Stomach Mucosa	stomach
48	chr8:87358200-87363600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:87358400-87362200	Weak transcription	HMEC	breast
50	chr8:87358400-87364200	Enhancers	Primary T helper cells fromperipheralblood	blood

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