Variant report

Variant	rs16914543
Chromosome Location	chr8:87430042-87430043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10090107	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10099858	0.84[YRI][hapmap]
rs10101280	0.89[EUR][1000 genomes]
rs10101337	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101658	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10106735	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10107469	0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs16907490	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16911667	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912199	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28446298	1.00[EUR][1000 genomes]
rs28504305	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28593581	0.87[AFR][1000 genomes]
rs28801137	1.00[EUR][1000 genomes]
rs3916649	1.00[EUR][1000 genomes]
rs56280479	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60177164	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.88[EUR][1000 genomes]
rs73254743	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254771	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73257062	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73271003	1.00[EUR][1000 genomes]
rs73273124	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73688826	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7461904	0.88[EUR][1000 genomes]
rs7464360	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7812422	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839610	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841007	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841939	1.00[EUR][1000 genomes]
rs9656826	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:87385000-87438000	Weak transcription	Fetal Brain Male	brain
5	chr8:87388400-87430600	Weak transcription	Fetal Kidney	kidney
6	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
7	chr8:87397400-87431200	Weak transcription	Fetal Brain Female	brain
8	chr8:87403000-87430600	Weak transcription	Esophagus	oesophagus
9	chr8:87404200-87440600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:87405400-87443600	Weak transcription	NHLF	lung
11	chr8:87406000-87433000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:87406800-87437400	Weak transcription	HSMM	muscle
13	chr8:87409000-87435000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:87409200-87440800	Weak transcription	Spleen	Spleen
15	chr8:87414400-87431400	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr8:87414800-87430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:87415200-87437400	Weak transcription	NHDF-Ad	bronchial
18	chr8:87416400-87443600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr8:87418200-87440800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:87419400-87430600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr8:87419400-87437800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:87422200-87432800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:87422200-87440800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:87422200-87441200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:87423000-87432600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr8:87423400-87431400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr8:87424400-87430600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:87424600-87430600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr8:87425000-87430600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:87425200-87430800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:87425400-87430600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:87425600-87430400	Weak transcription	Osteobl	bone
33	chr8:87426000-87430400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr8:87426000-87446400	Weak transcription	K562	blood
35	chr8:87426200-87430400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:87426400-87438400	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:87426800-87430600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:87426800-87430800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr8:87426800-87437200	Weak transcription	Hela-S3	cervix
40	chr8:87426800-87437600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:87426800-87437600	Weak transcription	NH-A	brain
42	chr8:87426800-87440800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr8:87427000-87430600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:87427000-87430600	Weak transcription	GM12878-XiMat	blood
45	chr8:87427000-87430600	Weak transcription	NHEK	skin
46	chr8:87427000-87437400	Weak transcription	HUVEC	blood vessel
47	chr8:87427200-87435200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:87427400-87430200	Enhancers	Liver	Liver
49	chr8:87427400-87430400	Weak transcription	Primary B cells from cord blood	blood
50	chr8:87427400-87437400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links