Variant report

Variant	rs60177164
Chromosome Location	chr8:87439926-87439927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87427506..87429121-chr8:87437907..87440675,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10090107	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10099858	0.85[AFR][1000 genomes]
rs10101280	0.89[EUR][1000 genomes]
rs10101337	1.00[EUR][1000 genomes]
rs10101658	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10106735	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10107469	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs11994220	0.84[AFR][1000 genomes]
rs16907490	1.00[EUR][1000 genomes]
rs16911667	1.00[EUR][1000 genomes]
rs16912199	1.00[EUR][1000 genomes]
rs16914543	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28361918	0.86[AFR][1000 genomes]
rs28446298	1.00[EUR][1000 genomes]
rs28504305	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28593581	0.87[AFR][1000 genomes]
rs28801137	1.00[EUR][1000 genomes]
rs3916649	1.00[EUR][1000 genomes]
rs56280479	1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73254743	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73257062	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73271003	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273124	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73688826	1.00[EUR][1000 genomes]
rs7461904	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7464360	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7812422	1.00[EUR][1000 genomes]
rs7839610	1.00[EUR][1000 genomes]
rs7841007	1.00[EUR][1000 genomes]
rs7841939	1.00[EUR][1000 genomes]
rs9656826	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9656828	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
4	chr8:87404200-87440600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:87405400-87443600	Weak transcription	NHLF	lung
6	chr8:87409200-87440800	Weak transcription	Spleen	Spleen
7	chr8:87416400-87443600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:87418200-87440800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:87422200-87440800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:87422200-87441200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:87426000-87446400	Weak transcription	K562	blood
12	chr8:87426800-87440800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:87427400-87452600	Weak transcription	HSMMtube	muscle
14	chr8:87427600-87485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:87428200-87443800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr8:87428600-87460800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:87429400-87440800	Weak transcription	Aorta	Aorta
18	chr8:87429400-87441200	Weak transcription	Gastric	stomach
19	chr8:87429400-87443600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:87429400-87443600	Weak transcription	Small Intestine	intestine
21	chr8:87429400-87443800	Weak transcription	Brain Angular Gyrus	brain
22	chr8:87429400-87453600	Weak transcription	Stomach Mucosa	stomach
23	chr8:87429600-87440000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:87429600-87440800	Weak transcription	Pancreas	Pancrea
25	chr8:87429800-87443800	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:87429800-87444000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:87430000-87440800	Weak transcription	Brain Substantia Nigra	brain
28	chr8:87430200-87440800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:87431200-87440800	Weak transcription	Esophagus	oesophagus
30	chr8:87431600-87440800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:87431600-87443800	Weak transcription	Colonic Mucosa	Colon
32	chr8:87431800-87443600	Weak transcription	GM12878-XiMat	blood
33	chr8:87432400-87443800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:87432600-87451200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr8:87432800-87440800	Weak transcription	Ovary	ovary
36	chr8:87432800-87443800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:87433000-87440600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr8:87434800-87440800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:87435000-87440000	Weak transcription	NHEK	skin
40	chr8:87436400-87440000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr8:87436400-87443600	Weak transcription	Fetal Brain Female	brain
42	chr8:87436400-87451800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr8:87436800-87442400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:87436800-87451600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr8:87436800-87483200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr8:87437000-87441600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr8:87437200-87445600	Strong transcription	Fetal Intestine Large	intestine
48	chr8:87437200-87450400	Strong transcription	Dnd41	blood
49	chr8:87437400-87441600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:87437400-87441800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links