Variant report

Variant	rs10106735
Chromosome Location	chr8:87384776-87384777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87384772..87387362-chr8:87392342..87394436,2	K562	blood:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10090107	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10099858	0.89[YRI][hapmap]
rs10101280	0.89[EUR][1000 genomes]
rs10101337	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101658	0.88[EUR][1000 genomes]
rs10107469	0.88[EUR][1000 genomes]
rs1054738	0.87[EUR][1000 genomes]
rs16907490	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16911667	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912199	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914543	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28446298	1.00[EUR][1000 genomes]
rs28504305	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28593581	0.88[AFR][1000 genomes]
rs28801137	1.00[EUR][1000 genomes]
rs3916649	1.00[EUR][1000 genomes]
rs56280479	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60177164	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61661701	1.00[EUR][1000 genomes]
rs7012745	0.88[EUR][1000 genomes]
rs73254743	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254771	0.88[EUR][1000 genomes]
rs73257062	0.88[EUR][1000 genomes]
rs73271003	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273124	0.88[EUR][1000 genomes]
rs73688826	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7461904	0.88[EUR][1000 genomes]
rs7464360	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes]
rs7812422	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839610	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841007	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841939	1.00[EUR][1000 genomes]
rs9656826	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87356800-87403800	Weak transcription	Aorta	Aorta
3	chr8:87357400-87403400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
5	chr8:87363800-87393800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:87364000-87397400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:87366000-87398200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:87366800-87423800	Weak transcription	Colonic Mucosa	Colon
9	chr8:87368200-87386600	Weak transcription	Hela-S3	cervix
10	chr8:87369600-87384800	Weak transcription	A549	lung
11	chr8:87370000-87384800	Weak transcription	Fetal Lung	lung
12	chr8:87373000-87394600	Weak transcription	Fetal Intestine Small	intestine
13	chr8:87373600-87385800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:87373800-87385000	Weak transcription	HepG2	liver
15	chr8:87374800-87387000	Weak transcription	Ovary	ovary
16	chr8:87375000-87387000	Weak transcription	NHEK	skin
17	chr8:87375400-87397400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:87375600-87387000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:87375600-87403000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:87377000-87387400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr8:87377200-87385800	Weak transcription	NH-A	brain
22	chr8:87378200-87386400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:87378400-87386600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:87378600-87386600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:87378600-87387000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr8:87378600-87387800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:87378600-87402200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:87378600-87402200	Weak transcription	Spleen	Spleen
29	chr8:87378800-87403800	Weak transcription	Psoas Muscle	Psoas
30	chr8:87379000-87387800	Weak transcription	Left Ventricle	heart
31	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
32	chr8:87379800-87387600	Weak transcription	Brain Angular Gyrus	brain
33	chr8:87379800-87392800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr8:87379800-87403800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:87380000-87384800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:87380200-87387800	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:87380200-87387800	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:87380400-87385200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:87380400-87386000	Weak transcription	HMEC	breast
40	chr8:87380400-87401800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:87380600-87387400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:87380800-87403600	Weak transcription	Stomach Mucosa	stomach
43	chr8:87381000-87386600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr8:87381000-87398800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:87381000-87403600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr8:87381000-87404000	Weak transcription	Small Intestine	intestine
47	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr8:87381200-87384800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:87381200-87397600	Weak transcription	Fetal Heart	heart
50	chr8:87381200-87425600	Weak transcription	K562	blood

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