Variant report

Variant	rs28364388
Chromosome Location	chr15:42676437-42676438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42672860..42675186-chr15:42675250..42677559,2	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10775126	0.84[EUR][1000 genomes]
rs10851409	0.84[EUR][1000 genomes]
rs11070370	0.84[EUR][1000 genomes]
rs11631983	0.80[EUR][1000 genomes]
rs11638784	0.90[EUR][1000 genomes]
rs12438369	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438453	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12438509	0.84[ASN][1000 genomes]
rs12438562	0.86[EUR][1000 genomes]
rs12440087	0.84[ASN][1000 genomes]
rs12441700	0.89[EUR][1000 genomes]
rs1359003	0.89[EUR][1000 genomes]
rs1359004	0.89[EUR][1000 genomes]
rs1659212	0.92[EUR][1000 genomes]
rs1659217	0.86[EUR][1000 genomes]
rs16972887	0.84[ASN][1000 genomes]
rs16973008	0.84[ASN][1000 genomes]
rs16973045	0.86[ASN][1000 genomes]
rs16973060	0.89[ASN][1000 genomes]
rs2289295	0.86[EUR][1000 genomes]
rs2407707	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2412688	0.84[ASN][1000 genomes]
rs2412705	0.86[EUR][1000 genomes]
rs28364390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28364393	0.84[ASN][1000 genomes]
rs28364416	0.88[EUR][1000 genomes]
rs2918459	0.86[EUR][1000 genomes]
rs2918461	0.86[EUR][1000 genomes]
rs3743005	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3743006	0.86[EUR][1000 genomes]
rs3743007	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3743008	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3825785	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3850774	0.89[EUR][1000 genomes]
rs4329897	0.86[EUR][1000 genomes]
rs4506867	0.89[ASN][1000 genomes]
rs4923940	0.84[EUR][1000 genomes]
rs4923943	0.84[EUR][1000 genomes]
rs4923945	0.89[ASN][1000 genomes]
rs4924644	0.84[ASN][1000 genomes]
rs4924653	0.81[EUR][1000 genomes]
rs4924658	0.84[EUR][1000 genomes]
rs4924660	0.84[EUR][1000 genomes]
rs4924672	0.89[ASN][1000 genomes]
rs4924673	0.89[ASN][1000 genomes]
rs4924674	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55882551	0.84[ASN][1000 genomes]
rs56257215	0.84[ASN][1000 genomes]
rs56670003	0.84[ASN][1000 genomes]
rs56702977	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56987883	0.89[ASN][1000 genomes]
rs57002846	0.82[EUR][1000 genomes]
rs57134130	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57347762	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57933952	0.84[ASN][1000 genomes]
rs57973092	0.89[ASN][1000 genomes]
rs57976413	0.84[ASN][1000 genomes]
rs58292736	0.84[ASN][1000 genomes]
rs58313689	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58712370	0.89[ASN][1000 genomes]
rs59094161	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59132828	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59138723	0.84[ASN][1000 genomes]
rs59320762	0.89[ASN][1000 genomes]
rs59974698	0.84[ASN][1000 genomes]
rs60634548	0.84[ASN][1000 genomes]
rs61069354	0.84[ASN][1000 genomes]
rs61133768	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6493033	0.84[ASN][1000 genomes]
rs6493045	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7163986	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7166785	0.83[EUR][1000 genomes]
rs7168709	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7175863	0.86[EUR][1000 genomes]
rs7177120	0.81[EUR][1000 genomes]
rs7179203	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7180279	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7181742	0.86[EUR][1000 genomes]
rs7183015	0.86[EUR][1000 genomes]
rs7183546	0.86[EUR][1000 genomes]
rs73398938	0.84[ASN][1000 genomes]
rs73400993	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73402707	0.89[ASN][1000 genomes]
rs73403365	0.84[ASN][1000 genomes]
rs73407488	0.84[ASN][1000 genomes]
rs73409577	0.81[ASN][1000 genomes]
rs751572	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs765830	0.82[EUR][1000 genomes]
rs8024113	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8025601	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8026198	0.82[EUR][1000 genomes]
rs8027016	0.84[ASN][1000 genomes]
rs8031315	0.84[EUR][1000 genomes]
rs8036380	0.86[EUR][1000 genomes]
rs8036596	0.84[EUR][1000 genomes]
rs8041951	0.89[ASN][1000 genomes]
rs9920921	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv832986	chr15:42587825-42753664	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv932995	chr15:42640015-42704121	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42645600-42677800	Weak transcription	Spleen	Spleen
2	chr15:42646000-42678600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:42647800-42678200	Weak transcription	Ovary	ovary
4	chr15:42652800-42684400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:42653200-42691600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:42654200-42677800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:42656000-42678800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:42656800-42693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:42656800-42697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:42657200-42678800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:42659600-42676800	Weak transcription	Lung	lung
12	chr15:42663000-42691400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:42663200-42678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:42666600-42676800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:42666600-42676800	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:42666600-42676800	Weak transcription	Left Ventricle	heart
17	chr15:42666800-42676800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:42670200-42676800	Weak transcription	Primary B cells from cord blood	blood
19	chr15:42672400-42688800	Weak transcription	Esophagus	oesophagus
20	chr15:42673400-42691800	Weak transcription	Primary T cells from cord blood	blood
21	chr15:42673800-42676800	Weak transcription	Brain Substantia Nigra	brain
22	chr15:42673800-42678000	Weak transcription	Fetal Intestine Small	intestine
23	chr15:42673800-42678200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:42674000-42694400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:42674600-42678200	Weak transcription	Aorta	Aorta
26	chr15:42674600-42682600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr15:42674600-42684400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:42674800-42678400	Weak transcription	Brain Anterior Caudate	brain
29	chr15:42675200-42676800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:42675200-42676800	Weak transcription	Adipose Nuclei	Adipose
31	chr15:42675200-42677800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:42675200-42683600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:42675200-42684800	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr15:42675200-42702800	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:42675600-42676600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:42675600-42691600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:42675800-42678800	Weak transcription	Brain Angular Gyrus	brain
38	chr15:42676000-42676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:42676000-42677800	Weak transcription	HSMMtube	muscle
40	chr15:42676200-42676600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:42676200-42677200	Weak transcription	Psoas Muscle	Psoas
42	chr15:42676200-42678000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:42676200-42682400	Strong transcription	Liver	Liver
44	chr15:42676400-42678000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
45	chr15:42676400-42678400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:42676400-42679000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr15:42676400-42679200	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr15:42676400-42679600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:42676400-42680600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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