Variant report

Variant	rs57002846
Chromosome Location	chr15:42586541-42586542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42584658..42587621-chr15:42618841..42621037,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10775126	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10851407	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10851408	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10851409	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11070370	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11631917	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11631983	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11638784	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12438369	0.81[EUR][1000 genomes]
rs12438562	0.90[EUR][1000 genomes]
rs12441642	0.81[EUR][1000 genomes]
rs12441700	0.88[EUR][1000 genomes]
rs12594162	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12917101	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359003	0.88[EUR][1000 genomes]
rs1359004	0.88[EUR][1000 genomes]
rs1659212	0.84[EUR][1000 genomes]
rs1659217	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1679002	0.81[EUR][1000 genomes]
rs1703750	0.81[EUR][1000 genomes]
rs2138831	0.81[EUR][1000 genomes]
rs2289295	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2407707	0.83[EUR][1000 genomes]
rs2412682	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2412685	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2412705	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28364388	0.82[EUR][1000 genomes]
rs28364390	0.81[EUR][1000 genomes]
rs2918459	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2918461	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3743006	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3850774	0.88[EUR][1000 genomes]
rs4329897	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4923940	0.93[EUR][1000 genomes]
rs4923943	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4924645	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4924648	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4924653	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4924658	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4924660	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4924674	0.87[EUR][1000 genomes]
rs56702977	0.82[EUR][1000 genomes]
rs57347762	0.81[EUR][1000 genomes]
rs58313689	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59132828	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs598360	0.81[EUR][1000 genomes]
rs6493027	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6493045	0.83[EUR][1000 genomes]
rs660126	0.82[EUR][1000 genomes]
rs7166785	0.82[EUR][1000 genomes]
rs7168709	0.82[EUR][1000 genomes]
rs7175863	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7177120	0.89[EUR][1000 genomes]
rs7181742	0.90[EUR][1000 genomes]
rs7183015	0.90[EUR][1000 genomes]
rs7183546	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73400993	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs765830	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8024732	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8025601	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8026198	0.82[EUR][1000 genomes]
rs8031315	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8036046	0.82[EUR][1000 genomes]
rs8036187	0.82[EUR][1000 genomes]
rs8036380	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8036596	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8037020	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9672382	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9920921	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3311734	chr15:42585625-42587286	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3311735	chr15:42585625-42587286	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
2	chr15:42568400-42604600	Weak transcription	NH-A	brain
3	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
4	chr15:42568600-42587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:42568600-42587000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:42568600-42593000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
8	chr15:42568600-42630800	Weak transcription	Dnd41	blood
9	chr15:42569000-42591000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:42570200-42586600	Strong transcription	Adipose Nuclei	Adipose
12	chr15:42570600-42586600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:42573400-42635800	Weak transcription	Gastric	stomach
14	chr15:42573600-42587200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:42573600-42602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:42573800-42592000	Weak transcription	Fetal Brain Female	brain
17	chr15:42573800-42605600	Weak transcription	Pancreas	Pancrea
18	chr15:42576000-42592400	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:42576200-42591600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:42576200-42593000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:42576200-42602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:42576200-42605800	Weak transcription	Esophagus	oesophagus
23	chr15:42576400-42602000	Weak transcription	Colonic Mucosa	Colon
24	chr15:42576400-42620800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:42577000-42590000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:42577800-42616200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:42578600-42592800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:42578800-42586600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr15:42578800-42587200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:42579000-42586800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:42579000-42592400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:42579000-42592400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:42579200-42588200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:42579200-42589800	Weak transcription	Fetal Lung	lung
35	chr15:42579200-42592400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:42579200-42593400	Weak transcription	Hela-S3	cervix
37	chr15:42579400-42586800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:42580600-42590400	Weak transcription	HepG2	liver
39	chr15:42580800-42586800	Strong transcription	Left Ventricle	heart
40	chr15:42581000-42587400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:42581000-42588200	Strong transcription	Liver	Liver
42	chr15:42581000-42590800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:42581000-42590800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:42581600-42586600	Strong transcription	Fetal Intestine Large	intestine
45	chr15:42581600-42601600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:42581800-42602600	Weak transcription	HMEC	breast
47	chr15:42582000-42601000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:42582000-42613400	Weak transcription	HUVEC	blood vessel
49	chr15:42583000-42586600	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:42583000-42587400	Strong transcription	Primary T cells from cord blood	blood

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