Variant report

Variant	rs2836604
Chromosome Location	chr21:40041295-40041296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:40039125..40041659-chr21:40042209..40043754,2	MCF-7	breast:
2	chr21:40040835..40041806-chr21:40083626..40084612,2	MCF-7	breast:
3	chr21:40040912..40041817-chr21:40507070..40508725,4	MCF-7	breast:
4	chr21:39985800..39986779-chr21:40040880..40041546,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1041780	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836616	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836618	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2836622	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836625	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836627	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2836636	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28379071	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28446127	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28718905	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs458465	0.87[CEU][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs464519	0.87[CEU][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4817954	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55742466	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55819392	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56154327	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62217558	0.94[ASN][1000 genomes]
rs6517474	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs733540	0.90[EUR][1000 genomes]
rs743447	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8126719	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8126858	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8134675	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9976546	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9979396	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9979424	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9979888	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9982483	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9983626	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40039400-40041600	Enhancers	Duodenum Mucosa	Duodenum
2	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:40040800-40042800	Weak transcription	Ovary	ovary
4	chr21:40040800-40043000	Weak transcription	Fetal Intestine Small	intestine

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