Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ETS2-6	chr21:40023301-40024477	NONHSAT082114

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1041780	0.92[EUR][1000 genomes]
rs2836604	0.92[EUR][1000 genomes]
rs2836616	0.90[EUR][1000 genomes]
rs2836618	0.90[EUR][1000 genomes]
rs2836622	0.90[EUR][1000 genomes]
rs2836625	0.90[EUR][1000 genomes]
rs2836627	0.89[EUR][1000 genomes]
rs2836636	0.84[EUR][1000 genomes]
rs28379071	0.90[EUR][1000 genomes]
rs28446127	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28718905	0.87[EUR][1000 genomes]
rs458465	1.00[CEU][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs461488	0.86[JPT][hapmap]
rs4817954	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55742466	0.85[EUR][1000 genomes]
rs55819392	0.93[EUR][1000 genomes]
rs56154327	0.85[EUR][1000 genomes]
rs6517474	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs733540	0.82[EUR][1000 genomes]
rs743447	0.84[EUR][1000 genomes]
rs8126719	0.84[EUR][1000 genomes]
rs8126858	0.84[EUR][1000 genomes]
rs8134675	0.90[EUR][1000 genomes]
rs9976018	0.83[CEU][hapmap]
rs9976546	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9979396	0.86[EUR][1000 genomes]
rs9979424	0.86[EUR][1000 genomes]
rs9979888	0.91[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9981408	0.83[CEU][hapmap]
rs9982483	0.86[EUR][1000 genomes]
rs9983626	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065541	chr21:40009959-40024976	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1057719	chr21:40009959-40025433	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1058663	chr21:40009959-40031681	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1055287	chr21:40013735-40031681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs464519	ATP5O	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40016000-40027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:40023800-40024800	Enhancers	Aorta	Aorta
3	chr21:40024000-40025400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search: