Variant report

Variant	rs28371986
Chromosome Location	chr3:180257966-180257967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11713314	0.84[EUR][1000 genomes]
rs13327745	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28722789	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56406114	0.80[AMR][1000 genomes]
rs57668336	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7633153	0.83[EUR][1000 genomes]
rs7637098	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7647003	0.83[EUR][1000 genomes]
rs904241	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9851773	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links