Variant report

Variant	rs7637098
Chromosome Location	chr3:180249531-180249532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11713314	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13327745	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1497891	0.88[EUR][1000 genomes]
rs2133007	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28371986	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28595523	0.83[YRI][hapmap]
rs28722789	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4519701	0.94[CEU][hapmap]
rs56406114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57668336	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6443696	0.83[YRI][hapmap]
rs6443700	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs6443701	0.83[AMR][1000 genomes]
rs6791597	0.87[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7611683	0.84[AFR][1000 genomes]
rs7613520	0.81[AFR][1000 genomes]
rs7627008	0.84[AFR][1000 genomes]
rs7633153	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7633440	0.84[AFR][1000 genomes]
rs7633630	0.96[EUR][1000 genomes]
rs7636793	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7645817	0.87[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7647003	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7647210	0.87[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7650672	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs904241	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832393	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9840876	0.96[EUR][1000 genomes]
rs9851773	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9865427	0.81[AFR][1000 genomes]
rs9866700	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180247600-180249600	Weak transcription	Ovary	ovary

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