Variant report
| Variant | rs4519701 |
|---|---|
| Chromosome Location | chr3:180260179-180260180 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11713314 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13327745 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1497891 | 0.89[EUR][1000 genomes] |
| rs2133007 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs28371986 | 0.83[EUR][1000 genomes] |
| rs28722789 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs56406114 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs57668336 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6443701 | 0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs6791597 | 0.80[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7633153 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7633630 | 0.97[EUR][1000 genomes] |
| rs7636793 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7637098 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7647003 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7647210 | 0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7650672 | 0.88[CEU][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs904241 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9832393 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9840876 | 0.97[EUR][1000 genomes] |
| rs9851773 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9866700 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007831 | chr3:180162003-180348203 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv536818 | chr3:180162003-180348203 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
