Variant report

Variant	rs7650672
Chromosome Location	chr3:180308259-180308260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11713314	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13327745	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28722789	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4519701	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs56406114	0.83[AMR][1000 genomes]
rs57668336	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62291047	0.95[EUR][1000 genomes]
rs6443701	0.82[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6791597	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7633153	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7636793	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7637098	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7645817	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs7647003	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7647210	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs904241	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9832393	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9851773	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180297200-180312200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180298000-180309800	Weak transcription	Brain Anterior Caudate	brain
3	chr3:180307600-180310400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:180308200-180308400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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