Variant report

Variant	rs9832393
Chromosome Location	chr3:180314912-180314913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11713314	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13327745	0.82[EUR][1000 genomes]
rs28722789	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56406114	0.82[AMR][1000 genomes]
rs57668336	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62291047	0.96[EUR][1000 genomes]
rs6443701	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6791597	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7633153	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7636793	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7637098	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7645817	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7647003	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7647210	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7650672	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs904241	0.82[EUR][1000 genomes]
rs9851773	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180313000-180319200	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links